RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 KCNH3Q9ULD8 1083 aa8.24□□□□□ -1.09
COL9A1-209ENST00000489861 NCANO14594 1321 aa8.24□□□□□ -1.09
COL9A1-209ENST00000489861 NFASCO94856 1347 aa8.24□□□□□ -1.09
COL9A1-209ENST00000489861 TNRC6BQ9UPQ9 1833 aaKnown RBP8.24□□□□□ -1.09
COL9A1-209ENST00000489861 PTPRDP23468 1912 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 CCDC163A0A0D9SF12 145 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 ERICH2A1L162 156 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 PYCARD-AS1I3L0S3 204 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 ARNTLO00327 626 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 PIK3CDO00329 1044 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 BACH1O14867 736 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 DCLK1O15075 740 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 ATXN7O15265 892 aaPredicted RBP8.23□□□□□ -1.09
COL9A1-209ENST00000489861 C8AP07357 584 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 PRR29P0C7W0 189 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 CEBPBP17676 345 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 GDI1P31150 447 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 OR1G1P47890 313 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 SOX9P48436 509 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 IRX4P78413 519 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 FAM78AQ5JUQ0 283 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 EFCAB12Q6NXP0 572 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 TXNDC11Q6PKC3 985 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 PRSS55Q6UWB4 352 aaPredicted RBP8.23□□□□□ -1.09
COL9A1-209ENST00000489861 VITQ6UXI7 678 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 COLGALT2Q8IYK4 626 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 PIBF1Q8WXW3 757 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 IRF7Q92985 503 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 FAM193BQ96PV7 902 aaPredicted RBP8.23□□□□□ -1.09
COL9A1-209ENST00000489861 UBAC1Q9BSL1 405 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 TRMT61BQ9BVS5 477 aaKnown RBP8.23□□□□□ -1.09
COL9A1-209ENST00000489861 TRPV5Q9NQA5 729 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 CHST12Q9NRB3 414 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 POLR3BQ9NW08 1133 aaPredicted RBP8.23□□□□□ -1.09
COL9A1-209ENST00000489861 GDE1Q9NZC3 331 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 SALL3Q9BXA9 1300 aa8.23□□□□□ -1.09
COL9A1-209ENST00000489861 AHCTF1Q8WYP5 2266 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 H0Y626 953 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 MAFGO15525 162 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 MEFVO15553 781 aaPredicted RBP8.22□□□□□ -1.09
COL9A1-209ENST00000489861 XYLBO75191 536 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 AKAP3O75969 853 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 TRIM16O95361 564 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 CD44P16070 742 aaKnown RBP8.22□□□□□ -1.09
COL9A1-209ENST00000489861 HOXA9P31269 272 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 LRRC32Q14392 662 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 SART3Q15020 963 aaKnown RBP8.22□□□□□ -1.09
COL9A1-209ENST00000489861 SWSAP1Q6NVH7 229 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 PDXDC2PQ6P474 469 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 CCNI2Q6ZMN8 369 aaPredicted RBP8.22□□□□□ -1.09
COL9A1-209ENST00000489861 CHD1LQ86WJ1 897 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 SMC5Q8IY18 1101 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 URGCPQ8TCY9 931 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 MAP7D2Q96T17 732 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 CLSTN3Q9BQT9 956 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 SDF4Q9BRK5 362 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 DSCC1Q9BVC3 393 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 OSBPL3Q9H4L5 887 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 SLC32A1Q9H598 525 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 CLMPQ9H6B4 373 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 ZNF302Q9NR11 478 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.22□□□□□ -1.09
COL9A1-209ENST00000489861 ZSWIM5Q9P217 1185 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 MRPS23Q9Y3D9 190 aaKnown RBP8.22□□□□□ -1.09
COL9A1-209ENST00000489861 FLNCQ14315 2725 aa8.22□□□□□ -1.09
COL9A1-209ENST00000489861 MYO16Q9Y6X6 1858 aa8.21□□□□□ -1.09
COL9A1-209ENST00000489861 SLC38A8A6NNN8 435 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 DDX39AO00148 427 aaKnown RBP8.21□□□□□ -1.1
COL9A1-209ENST00000489861 KHNYNO15037 678 aaKnown RBP8.21□□□□□ -1.1
COL9A1-209ENST00000489861 ADAM12O43184 909 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 RHOP08100 348 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 SKIP12755 728 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 SDSP20132 328 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 DSC1Q08554 894 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 DRP2Q13474 957 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 CCINQ13939 588 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 USP41Q3LFD5 358 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 DGKKQ5KSL6 1271 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 RTP2Q5QGT7 225 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 LIN9Q5TKA1 542 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 FAM160B1Q5W0V3 765 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 FUT10Q6P4F1 479 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 MRPL10Q7Z7H8 261 aaKnown RBP8.21□□□□□ -1.1
COL9A1-209ENST00000489861 ZNF589Q86UQ0 364 aaPredicted RBP8.21□□□□□ -1.1
COL9A1-209ENST00000489861 CKAP2LQ8IYA6 745 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 SLC7A14Q8TBB6 771 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 CUL5Q93034 780 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 TCEAL4Q96EI5 215 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 FAM227BQ96M60 508 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 SCLT1Q96NL6 688 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 LNPKQ9C0E8 428 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 RSAD1Q9HA92 442 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 ZFP14Q9HCL3 533 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 PLSCR2Q9NRY7 297 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 PIN4Q9Y237 131 aaKnown RBP8.21□□□□□ -1.1
COL9A1-209ENST00000489861 PCDHB2Q9Y5E7 798 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 CEP192Q8TEP8 1941 aa8.21□□□□□ -1.1
COL9A1-209ENST00000489861 KNL1Q8NG31 2342 aa8.2□□□□□ -1.1
COL9A1-209ENST00000489861 NBPF19A0A087WUL8 3843 aa8.2□□□□□ -1.1
COL9A1-209ENST00000489861 ITPR3Q14573 2671 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms