RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	CHST7	Q9NS84	486 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	SORCS3	Q9UPU3	1222 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	USP20	Q9Y2K6	914 aa		13.72	□□□□□ -0.21
SREBF1-215	ENST00000487401	SF3B1	O75533	1304 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	CCDC195	A0A1B0GUA6	201 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	CASTOR2	A6NHX0	329 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	RECQL4	O94761	1208 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	EFEMP2	O95967	443 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	MYB	P10242	640 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	PRPH	P41219	470 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	ZRSR1	Q15695	479 aa	Known RBP	13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	RILPL1	Q5EBL4	403 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	NT5DC1	Q5TFE4	455 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	ATF7IP2	Q5U623	682 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	CYP26C1	Q6V0L0	522 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	C15orf39	Q6ZRI6	1047 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	GPR65	Q8IYL9	337 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	HDAC7	Q8WUI4	952 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	ASIC4	Q96FT7	647 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	TMX3	Q96JJ7	454 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	B3GALT6	Q96L58	329 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	PRRX2	Q99811	253 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	GDA	Q9Y2T3	454 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	C5orf42	Q9H799	3197 aa		13.71	□□□□□ -0.21
SREBF1-215	ENST00000487401	KIAA1671	Q9BY89	1806 aa		13.71	□□□□□ -0.22
SREBF1-215	ENST00000487401	PLXNA4	Q9HCM2	1894 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	PP2D1	A8MPX8	630 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401		E9PMD0	336 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	BRD1	O95696	1058 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	C1R	P00736	705 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	ASGR2	P07307	311 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	SPATA31D3	P0C874	917 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	CDC25A	P30304	524 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	MCM2	P49736	904 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	PEX3	P56589	373 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	NHLH1	Q02575	133 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	DMP1	Q13316	513 aa	Predicted RBP	13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	IL17A	Q16552	155 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	EEF1DP3	Q658K8	133 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	SPATA31D4	Q6ZUB0	917 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	DRC1	Q96MC2	740 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	TTPAL	Q9BTX7	342 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	PLEKHA4	Q9H4M7	779 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	PIDD1	Q9HB75	910 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	FNIP2	Q9P278	1114 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	LOXHD1	Q8IVV2	1947 aa		13.7	□□□□□ -0.22
SREBF1-215	ENST00000487401	PHLPP2	Q6ZVD8	1323 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	PTGES	O14684	152 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	HIP1R	O75146	1068 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	GJB2	P29033	226 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	NPTX2	P47972	431 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	PTPN5	P54829	565 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	ELAVL2	Q12926	359 aa	Known RBP	13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	IER5L	Q5T953	404 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	FAM171A1	Q5VUB5	890 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	ALYREF	Q86V81	257 aa	Known RBP	13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	CEP57	Q86XR8	500 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	GLYCTK	Q8IVS8	523 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	FEZF2	Q8TBJ5	459 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	HASPIN	Q8TF76	798 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	SMG7	Q92540	1137 aa	Known RBP	13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	STAM	Q92783	540 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	PAAF1	Q9BRP4	392 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	MRPL4	Q9BYD3	311 aa	Known RBP	13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	KMT5A	Q9NQR1	393 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	CACNG4	Q9UBN1	327 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	SMC3	Q9UQE7	1217 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	TNFSF13B	Q9Y275	285 aa		13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	RBM19	Q9Y4C8	960 aa	Known RBP	13.69	□□□□□ -0.22
SREBF1-215	ENST00000487401	TGM5	O43548	720 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	RFPL2	O75678	378 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	KIF4A	O95239	1232 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	EDN1	P05305	212 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	RPL17	P18621	184 aa	Known RBP	13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	AVPR2	P30518	371 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	GBP2	P32456	591 aa	Predicted RBP	13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	YARS	P54577	528 aa	Known RBP	13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	RINT1	Q6NUQ1	792 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	PDXDC1	Q6P996	788 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	CDK5RAP3	Q96JB5	506 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	TCHP	Q9BT92	498 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	RUSC1	Q9BVN2	902 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	TIPIN	Q9BVW5	301 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	CCDC94	Q9BW85	323 aa	Predicted RBP	13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	RHOBTB2	Q9BYZ6	727 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	TMEM134	Q9H6X4	195 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	WDR6	Q9NNW5	1121 aa	Known RBP	13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	KCNG1	Q9UIX4	513 aa		13.68	□□□□□ -0.22
SREBF1-215	ENST00000487401	B3GAT3	O94766	335 aa		13.67	□□□□□ -0.22
SREBF1-215	ENST00000487401	SMTN	P53814	917 aa		13.67	□□□□□ -0.22
SREBF1-215	ENST00000487401	VCP	P55072	806 aa	Known RBP	13.67	□□□□□ -0.22
SREBF1-215	ENST00000487401	ATP2C1	P98194	919 aa	Predicted RBP	13.67	□□□□□ -0.22
SREBF1-215	ENST00000487401	TDG	Q13569	410 aa		13.67	□□□□□ -0.22
SREBF1-215	ENST00000487401	PSMD5	Q16401	504 aa		13.67	□□□□□ -0.22
SREBF1-215	ENST00000487401	RTP2	Q5QGT7	225 aa		13.67	□□□□□ -0.22
SREBF1-215	ENST00000487401	LILRA6	Q6PI73	481 aa		13.67	□□□□□ -0.22
SREBF1-215	ENST00000487401	DCLRE1A	Q6PJP8	1040 aa		13.67	□□□□□ -0.22
SREBF1-215	ENST00000487401	C1orf186	Q6ZWK4	172 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms