RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 SPATA16Q9BXB7 569 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 TRIM55Q9BYV6 548 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 ASCC2Q9H1I8 757 aaPredicted RBP6.65□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF212Q9UDV6 495 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 MYH3P11055 1940 aa6.65□□□□□ -1.35
VPS13D-209ENST00000487188 COQ9O75208 318 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 POTEJP0CG39 1038 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 RASA1P20936 1047 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 PTGIRP43119 386 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ARFIP2P53365 341 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 CCDC110Q8TBZ0 833 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 LZICQ8WZA0 190 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 SPOCK2Q92563 424 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ART4Q93070 314 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ARHGEF26Q96DR7 871 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 NSL1Q96IY1 281 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 CLMNQ96JQ2 1002 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 CFAP57Q96MR6 1250 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 FNBP1Q96RU3 617 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 BTBD10Q9BSF8 475 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 PCYOX1Q9UHG3 505 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 PHF24Q9UPV7 400 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 SLIT2O94813 1529 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 NCANO14594 1321 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 TIAM2Q8IVF5 1701 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ANKRD63C9JTQ0 380 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ZSCAN9O15535 394 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 PLS3P13797 630 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 MAN1A1P33908 653 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 RTP1P59025 263 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 R3HDM1Q15032 1099 aaKnown RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 EDRF1Q3B7T1 1238 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 DCAF12L1Q5VU92 463 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 DSTYKQ6XUX3 929 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 RASSF3Q86WH2 238 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 SLC13A5Q86YT5 568 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 SH3RF3Q8TEJ3 882 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 KRT35Q92764 455 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 DHX36Q9H2U1 1008 aaKnown RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 SAR1AQ9NR31 198 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ANKFY1Q9P2R3 1169 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 PCDHA12Q9UN75 941 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 SMG5Q9UPR3 1016 aaKnown RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 EP400Q96L91 3159 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 MEGF6O75095 1541 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 USP17L3A6NCW0 530 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 USP17L4A6NCW7 530 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 BHMG1C9JSJ3 638 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 SOCS7O14512 581 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ATP2A1O14983 1001 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 RAD21O60216 631 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ITIH2P19823 946 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 FGFR2P21802 821 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 COMTP21964 271 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 CCNFP41002 786 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 CPA2P48052 419 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 MARCKSL1P49006 195 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 CAV1Q03135 178 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 CETN1Q12798 172 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 OVGP1Q12889 678 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ORC2Q13416 577 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 MED21Q13503 144 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 C1orf146Q5VVC0 180 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 TTC27Q6P3X3 843 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 USP17L1Q7RTZ2 530 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 KCNK18Q7Z418 384 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 DGKHQ86XP1 1220 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 FAM186BQ8IYM0 893 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 RIBC1Q8N443 379 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 BBOF1Q8ND07 529 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 PHC3Q8NDX5 983 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 LNX1Q8TBB1 728 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 RBM46Q8TBY0 533 aaKnown RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 LENG1Q96BZ8 264 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF653Q96CK0 615 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 SAYSD1Q9NPB0 183 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 NINJ2Q9NZG7 142 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 WHRNQ9P202 907 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 DDX25Q9UHL0 483 aaKnown RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 FAF1Q9UNN5 650 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 SUGT1Q9Y2Z0 365 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF711Q9Y462 761 aa6.64□□□□□ -1.35
VPS13D-209ENST00000487188 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.64□□□□□ -1.35
VPS13D-209ENST00000487188 ARHGAP42A6NI28 874 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 PDLIM1O00151 329 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 SMAPO00193 183 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 CLDN3O15551 220 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 NR3C1P04150 777 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 VCAM1P19320 739 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 CHKAP35790 457 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 LRRC36Q1X8D7 754 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 P3H1Q32P28 736 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 HSP90AA5PQ58FG0 334 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 SLC45A4Q5BKX6 768 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 ACSBG2Q5FVE4 666 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 CGB2Q6NT52 195 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF746Q6NUN9 644 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-209ENST00000487188 ERMNQ8TAM6 284 aa6.63□□□□□ -1.35
VPS13D-209ENST00000487188 CCDC97Q96F63 343 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-209ENST00000487188 CATSPER2Q96P56 530 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms