RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 ZNF185O15231 689 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 RECQL4O94761 1208 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 ALOX15P16050 662 aaPredicted RBP5.4□□□□□ -1.54
VPS41-213ENST00000485955 PTGS2P35354 604 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 SREBF1P36956 1147 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 RNASE9P60153 205 aaKnown RBP5.4□□□□□ -1.54
VPS41-213ENST00000485955 SEPT2Q15019 361 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 NOMO1Q15155 1222 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 ANO4Q32M45 955 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 METRNLQ641Q3 311 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 KRTAP5-3Q6L8H2 238 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 EFCAB12Q6NXP0 572 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 PDZD4Q76G19 769 aaPredicted RBP5.4□□□□□ -1.54
VPS41-213ENST00000485955 ZNF572Q7Z3I7 529 aaPredicted RBP5.4□□□□□ -1.54
VPS41-213ENST00000485955 VRK3Q8IV63 474 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 RPUSD2Q8IZ73 545 aaKnown RBP5.4□□□□□ -1.54
VPS41-213ENST00000485955 CNTD1Q8N815 330 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 OR10H5Q8NGA6 315 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 OR2I1PQ8NGU4 316 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 TFAP2CQ92754 450 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 LENG9Q96B70 501 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 LDAHQ9H6V9 325 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 RBM12Q9NTZ6 932 aaKnown RBP5.4□□□□□ -1.54
VPS41-213ENST00000485955 TRPM5Q9NZQ8 1165 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 POGKQ9P215 609 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 FZD1Q9UP38 647 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 SIK3Q9Y2K2 1263 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 ATP8A1Q9Y2Q0 1164 aa5.4□□□□□ -1.54
VPS41-213ENST00000485955 CXorf49A8MYA2 514 aaPredicted RBP5.39□□□□□ -1.55
VPS41-213ENST00000485955 ZSCAN20P17040 1043 aaPredicted RBP5.39□□□□□ -1.55
VPS41-213ENST00000485955 ECHS1P30084 290 aa5.39□□□□□ -1.55
VPS41-213ENST00000485955 SLC6A9P48067 706 aa5.39□□□□□ -1.55
VPS41-213ENST00000485955 FLT3LGP49771 235 aa5.39□□□□□ -1.55
VPS41-213ENST00000485955 KLF1Q13351 362 aaPredicted RBP5.39□□□□□ -1.55
VPS41-213ENST00000485955 INAVAQ3KP66 663 aa5.39□□□□□ -1.55
VPS41-213ENST00000485955 FAM102AQ5T9C2 384 aaPredicted RBP5.39□□□□□ -1.55
VPS41-213ENST00000485955 PQLC1Q8N2U9 271 aa5.39□□□□□ -1.55
VPS41-213ENST00000485955 CBARPQ8N350 705 aaPredicted RBP5.39□□□□□ -1.55
VPS41-213ENST00000485955 NEU1Q99519 415 aa5.39□□□□□ -1.55
VPS41-213ENST00000485955 TMX1Q9H3N1 280 aa5.39□□□□□ -1.55
VPS41-213ENST00000485955 CLCA2Q9UQC9 943 aa5.39□□□□□ -1.55
VPS41-213ENST00000485955 GPR45Q9Y5Y3 372 aa5.39□□□□□ -1.55
VPS41-213ENST00000485955 HS3ST4Q9Y661 456 aa5.39□□□□□ -1.55
VPS41-213ENST00000485955 COL4A3Q01955 1670 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 DRGXA6NNA5 263 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 LPXNO60711 386 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 NCR1O76036 304 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 ITGB1P05556 798 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 AGXTP21549 392 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 PDCD4Q53EL6 469 aaKnown RBP5.38□□□□□ -1.55
VPS41-213ENST00000485955 MBNL2Q5VZF2 373 aaKnown RBP5.38□□□□□ -1.55
VPS41-213ENST00000485955 AFMIDQ63HM1 303 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 PCSK4Q6UW60 755 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 GDF7Q7Z4P5 450 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 PPM1NQ8N819 430 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 FAM193BQ96PV7 902 aaPredicted RBP5.38□□□□□ -1.55
VPS41-213ENST00000485955 DCLRE1CQ96SD1 692 aaKnown RBP5.38□□□□□ -1.55
VPS41-213ENST00000485955 CEP89Q96ST8 783 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 SLC46A2Q9BY10 475 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 ZNF277Q9NRM2 450 aaPredicted RBP5.38□□□□□ -1.55
VPS41-213ENST00000485955 MCM8Q9UJA3 840 aa5.38□□□□□ -1.55
VPS41-213ENST00000485955 CENPVL1A0A0U1RR11 272 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 FPR1P21462 350 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 GUCY1A2P33402 732 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 CHN2P52757 468 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 SLC5A3P53794 718 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 INHBCP55103 352 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 PER3P56645 1201 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 CLRN1P58418 232 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 PROKR1Q8TCW9 393 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 DPF2Q92785 391 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 UHRF1Q96T88 793 aaPredicted RBP5.37□□□□□ -1.55
VPS41-213ENST00000485955 MYOCQ99972 504 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 TTPALQ9BTX7 342 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 MENTQ9BUN1 341 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 ADI1Q9BV57 179 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 PUS7LQ9H0K6 701 aaKnown RBP5.37□□□□□ -1.55
VPS41-213ENST00000485955 CCDC8Q9H0W5 538 aaPredicted RBP5.37□□□□□ -1.55
VPS41-213ENST00000485955 AKIP1Q9NQ31 210 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 WASHC2AQ641Q2 1341 aa5.37□□□□□ -1.55
VPS41-213ENST00000485955 POLR2AP24928 1970 aaKnown RBP5.36□□□□□ -1.55
VPS41-213ENST00000485955 A0A087X1B8 175 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 TRIM75PA6NK02 468 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 PJA2O43164 708 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 SUV39H1O43463 412 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 NDUFA10O95299 355 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 RBP3P10745 1247 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 LAG3P18627 525 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 MGAT1P26572 445 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 PCSK1P29120 753 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 IARSP41252 1262 aaKnown RBP5.36□□□□□ -1.55
VPS41-213ENST00000485955 CDKN1CP49918 316 aaPredicted RBP5.36□□□□□ -1.55
VPS41-213ENST00000485955 RAP2BP61225 183 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 AMPD3Q01432 767 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 MGAT2Q10469 447 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 TIGD2Q4W5G0 525 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 ATXN7L2Q5T6C5 722 aaPredicted RBP5.36□□□□□ -1.55
VPS41-213ENST00000485955 LAIR1Q6GTX8 287 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 PGM2L1Q6PCE3 622 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 FAM180AQ6UWF9 173 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms