RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 VPS54Q9P1Q0 977 aa5.52□□□□□ -1.53
PTCD3-213ENST00000480102 ORC3Q9UBD5 711 aaPredicted RBP5.52□□□□□ -1.53
PTCD3-213ENST00000480102 TCEAL9Q9UHQ7 104 aa5.52□□□□□ -1.53
PTCD3-213ENST00000480102 PCDHA2Q9Y5H9 948 aa5.52□□□□□ -1.53
PTCD3-213ENST00000480102 CEP290O15078 2479 aa5.52□□□□□ -1.53
PTCD3-213ENST00000480102 DOCK3Q8IZD9 2030 aa5.52□□□□□ -1.53
PTCD3-213ENST00000480102 SZT2Q5T011 3432 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 IGKV6-21A0A0C4DH24 114 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 CCDC194A0A1B0GVG4 234 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 hCG_1642624A0A1W2PR95 340 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 MSH4O15457 936 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 CCNE2O96020 404 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 FGBP02675 491 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 SMIM10L2AP0DMW4 78 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 SMIM10L2BP0DMW5 78 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 ARP10275 920 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 CKBP12277 381 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 POU3F3P20264 500 aaPredicted RBP5.51□□□□□ -1.53
PTCD3-213ENST00000480102 PDCP20941 246 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 MAPK1P28482 360 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 KRT2P35908 639 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 TCF7P36402 384 aaPredicted RBP5.51□□□□□ -1.53
PTCD3-213ENST00000480102 ZNF76P36508 570 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 CCT2P78371 535 aaKnown RBP5.51□□□□□ -1.53
PTCD3-213ENST00000480102 POU5F1BQ06416 359 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 TRIM29Q14134 588 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 SAFBQ15424 915 aaKnown RBP eCLIP5.51□□□□□ -1.53
PTCD3-213ENST00000480102 PLEKHG4Q58EX7 1191 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 XKR3Q5GH77 459 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 ODR4Q5SWX8 454 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 CNKSR3Q6P9H4 555 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 C16orf59Q7L2K0 433 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 C4orf19Q8IY42 314 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 CYP2W1Q8TAV3 490 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 ATP6V0A1Q93050 837 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 SNX21Q969T3 373 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 CCDC74AQ96AQ1 378 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 PCYT2Q99447 389 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 FTHL17Q9BXU8 183 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 TRPV6Q9H1D0 765 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 CLEC4MQ9H2X3 399 aaPredicted RBP5.51□□□□□ -1.53
PTCD3-213ENST00000480102 RNPEPQ9H4A4 650 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 TRMT13Q9NUP7 481 aaKnown RBP5.51□□□□□ -1.53
PTCD3-213ENST00000480102 RTEL1Q9NZ71 1219 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 HDAC6Q9UBN7 1215 aa5.51□□□□□ -1.53
PTCD3-213ENST00000480102 ZMYND8Q9ULU4 1186 aaPredicted RBP5.51□□□□□ -1.53
PTCD3-213ENST00000480102 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.51□□□□□ -1.53
PTCD3-213ENST00000480102 COL11A1P12107 1806 aaPredicted RBP5.51□□□□□ -1.53
PTCD3-213ENST00000480102 COL4A6Q14031 1691 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 SCN10AQ9Y5Y9 1956 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 RSPH10B2B2RC85 870 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 BMP15O95972 392 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 P4HBP07237 508 aaKnown RBP5.5□□□□□ -1.53
PTCD3-213ENST00000480102 RSPH10BP0C881 870 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 CSF2RAP15509 400 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 SCP2P22307 547 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 ITPKAP23677 461 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 PRPHP41219 470 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 PCDH1Q08174 1060 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 SPIRE1Q08AE8 756 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 ST3GAL1Q11201 340 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 PPFIA1Q13136 1202 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 GPNMBQ14956 572 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 PLCB4Q15147 1175 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 TARBP2Q15633 366 aaKnown RBP5.5□□□□□ -1.53
PTCD3-213ENST00000480102 RAB30Q15771 203 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 SPRED3Q2MJR0 410 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 MARCH8Q5T0T0 291 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 JAKMIP3Q5VZ66 844 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 ANKRD34AQ69YU3 496 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 KRT40Q6A162 431 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 LRRC8DQ7L1W4 858 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 NOSTRINQ8IVI9 506 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 DIS3L2Q8IYB7 885 aaKnown RBP5.5□□□□□ -1.53
PTCD3-213ENST00000480102 ARMC10Q8N2F6 343 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 LINC01465Q8N7H1 131 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 LMBR1Q8WVP7 490 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 DHX38Q92620 1227 aaKnown RBP5.5□□□□□ -1.53
PTCD3-213ENST00000480102 GLG1Q92896 1179 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 FAM46AQ96IP4 442 aaKnown RBP5.5□□□□□ -1.53
PTCD3-213ENST00000480102 TMX3Q96JJ7 454 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 MTMR9Q96QG7 549 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 HSD17B14Q9BPX1 270 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.5□□□□□ -1.535e-13■□□□□ 9.5
PTCD3-213ENST00000480102 RUSC1Q9BVN2 902 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 TEKT3Q9BXF9 490 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 NFKBIZQ9BYH8 718 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 ABCB6Q9NP58 842 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 DISC1Q9NRI5 854 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 NRBP2Q9NSY0 501 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 DDX25Q9UHL0 483 aaKnown RBP5.5□□□□□ -1.53
PTCD3-213ENST00000480102 TUBE1Q9UJT0 475 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 VAV3Q9UKW4 847 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 NAP1L2Q9ULW6 460 aaPredicted RBP5.5□□□□□ -1.53
PTCD3-213ENST00000480102 PCDHA11Q9Y5I1 949 aa5.5□□□□□ -1.53
PTCD3-213ENST00000480102 DDX49Q9Y6V7 483 aaKnown RBP5.5□□□□□ -1.53
PTCD3-213ENST00000480102 CDH23Q9H251 3354 aa5.49□□□□□ -1.53
PTCD3-213ENST00000480102 LOC100289279A0A1B0GTE1 492 aa5.49□□□□□ -1.53
PTCD3-213ENST00000480102 MEGF11A6BM72 1044 aa5.49□□□□□ -1.53
PTCD3-213ENST00000480102 TREHO43280 583 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms