RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ADAM28Q9UKQ2 775 aa15.54■□□□□ 0.08
UPF3A-204ENST00000475218 SFI1A8K8P3 1242 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 C2CD4DB7Z1M9 353 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 KIF4AO95239 1232 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 URODP06132 367 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 GUCY2CP25092 1073 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 KLRC2P26717 231 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 ZXDAP98168 799 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 TUSC3Q13454 348 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 ARSHQ5FYA8 562 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 ARL6IP4Q66PJ3 421 aaKnown RBP15.53■□□□□ 0.08
UPF3A-204ENST00000475218 FUT10Q6P4F1 479 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 ACO2Q99798 780 aaKnown RBP15.53■□□□□ 0.08
UPF3A-204ENST00000475218 COLEC11Q9BWP8 271 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 EMILIN2Q9BXX0 1053 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 TNFSF13BQ9Y275 285 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.53■□□□□ 0.08
UPF3A-204ENST00000475218 MUC6Q6W4X9 2439 aa15.53■□□□□ 0.08
UPF3A-204ENST00000475218 PHLPP2Q6ZVD8 1323 aa15.52■□□□□ 0.08
UPF3A-204ENST00000475218 CASTOR2A6NHX0 329 aa15.52■□□□□ 0.08
UPF3A-204ENST00000475218 PROZP22891 400 aa15.52■□□□□ 0.08
UPF3A-204ENST00000475218 HSP90AA2PQ14568 343 aaPredicted RBP15.52■□□□□ 0.08
UPF3A-204ENST00000475218 CES5AQ6NT32 575 aa15.52■□□□□ 0.08
UPF3A-204ENST00000475218 CD300LGQ6UXG3 332 aa15.52■□□□□ 0.08
UPF3A-204ENST00000475218 CABP7Q86V35 215 aa15.52■□□□□ 0.08
UPF3A-204ENST00000475218 PPFIBP1Q86W92 1011 aa15.52■□□□□ 0.08
UPF3A-204ENST00000475218 SYT2Q8N9I0 419 aaPredicted RBP15.52■□□□□ 0.08
UPF3A-204ENST00000475218 CDT1Q9H211 546 aa15.52■□□□□ 0.08
UPF3A-204ENST00000475218 TMEM134Q9H6X4 195 aa15.52■□□□□ 0.08
UPF3A-204ENST00000475218 GDAQ9Y2T3 454 aa15.52■□□□□ 0.08
UPF3A-204ENST00000475218 MYO10Q9HD67 2058 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 MYH11P35749 1972 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 NPHP3-ACAD11A0A0J9YXS1 232 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 CCDC169A6NNP5 214 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 K7ERI5 159 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 MTHFRP42898 656 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 RAD51AP2Q09MP3 1159 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 ZRSR1Q15695 479 aaKnown RBP15.52■□□□□ 0.07
UPF3A-204ENST00000475218 PTPN21Q16825 1174 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 DCAF4L1Q3SXM0 396 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 RTP2Q5QGT7 225 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 TRIM67Q6ZTA4 783 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 GPR149Q86SP6 731 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 HASPINQ8TF76 798 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 NECTIN4Q96NY8 510 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 PPP1R10Q96QC0 940 aaKnown RBP15.52■□□□□ 0.07
UPF3A-204ENST00000475218 NTPCRQ9BSD7 190 aaKnown RBP15.52■□□□□ 0.07
UPF3A-204ENST00000475218 TARS2Q9BW92 718 aaKnown RBP15.52■□□□□ 0.07
UPF3A-204ENST00000475218 BACH2Q9BYV9 841 aa15.52■□□□□ 0.07
UPF3A-204ENST00000475218 MTCL1Q9Y4B5 1905 aaKnown RBP15.51■□□□□ 0.07
UPF3A-204ENST00000475218 SLC16A4O15374 487 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 PAPLNO95428 1278 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 MYBP10242 640 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 RPL17P18621 184 aaKnown RBP15.51■□□□□ 0.07
UPF3A-204ENST00000475218 TMEM132AQ24JP5 1023 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 XKR4Q5GH76 650 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 GLRA4Q5JXX5 417 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 LILRA6Q6PI73 481 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 ALKAL1Q6UXT8 129 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 ASIC4Q96FT7 647 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 DRC1Q96MC2 740 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 ADPGKQ9BRR6 497 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 SMOC2Q9H3U7 446 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 SFXN1Q9H9B4 322 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 MAN1C1Q9NR34 630 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 TSHZ2Q9NRE2 1034 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 BLOC1S4Q9NUP1 217 aa15.51■□□□□ 0.07
UPF3A-204ENST00000475218 ARIH1Q9Y4X5 557 aaPredicted RBP15.51■□□□□ 0.07
UPF3A-204ENST00000475218 THP07101 528 aa15.5■□□□□ 0.07
UPF3A-204ENST00000475218 PLA2G4BP0C869 781 aa15.5■□□□□ 0.07
UPF3A-204ENST00000475218 SPATA31D3P0C874 917 aa15.5■□□□□ 0.07
UPF3A-204ENST00000475218 PLA2G5P39877 138 aa15.5■□□□□ 0.07
UPF3A-204ENST00000475218 SOX4Q06945 474 aaPredicted RBP15.5■□□□□ 0.07
UPF3A-204ENST00000475218 DMP1Q13316 513 aaPredicted RBP15.5■□□□□ 0.07
UPF3A-204ENST00000475218 PRSS55Q6UWB4 352 aaPredicted RBP15.5■□□□□ 0.07
UPF3A-204ENST00000475218 SPATA31D4Q6ZUB0 917 aa15.5■□□□□ 0.07
UPF3A-204ENST00000475218 GPR65Q8IYL9 337 aa15.5■□□□□ 0.07
UPF3A-204ENST00000475218 TMEM87AQ8NBN3 555 aa15.5■□□□□ 0.07
UPF3A-204ENST00000475218 TMEM161BQ8NDZ6 487 aa15.5■□□□□ 0.07
UPF3A-204ENST00000475218 ZBTB45Q96K62 511 aaPredicted RBP15.5■□□□□ 0.07
UPF3A-204ENST00000475218 RIPOR3Q96MK2 946 aa15.5■□□□□ 0.07
UPF3A-204ENST00000475218 ZMAT2Q96NC0 199 aaKnown RBP15.5■□□□□ 0.07
UPF3A-204ENST00000475218 KMT5AQ9NQR1 393 aa15.5■□□□□ 0.07
UPF3A-204ENST00000475218 TMEM221A6NGB7 291 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 M0R296 226 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 N4BP1O75113 896 aaKnown RBP15.49■□□□□ 0.07
UPF3A-204ENST00000475218 NR1I2O75469 434 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 RFPL2O75678 378 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 ADH1AP07327 375 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 GRM5P41594 1212 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 CACNB1Q02641 598 aaPredicted RBP15.49■□□□□ 0.07
UPF3A-204ENST00000475218 SF3A1Q15459 793 aaKnown RBP15.49■□□□□ 0.07
UPF3A-204ENST00000475218 USP41Q3LFD5 358 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 ATAT1Q5SQI0 421 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 C3orf58Q8NDZ4 430 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 SPIRE2Q8WWL2 714 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 RIN2Q8WYP3 895 aaPredicted RBP15.49■□□□□ 0.07
UPF3A-204ENST00000475218 ZNF707Q96C28 371 aaPredicted RBP15.49■□□□□ 0.07
UPF3A-204ENST00000475218 HAPLN2Q9GZV7 340 aa15.49■□□□□ 0.07
UPF3A-204ENST00000475218 C17orf75Q9HAS0 396 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms