RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 TMEM87BQ96K49 555 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 TMEM79Q9BSE2 394 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 CCSER1Q9C0I3 900 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 RXFP1Q9HBX9 757 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 EHD3Q9NZN3 535 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 STON1Q9Y6Q2 735 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 SPAG6O75602 509 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 CD19P15391 556 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 YWHAHQ04917 246 aaPredicted RBP9.46□□□□□ -0.89
COL6A3-210ENST00000473258 TAF1BQ53T94 588 aaPredicted RBP9.46□□□□□ -0.89
COL6A3-210ENST00000473258 NYAP1Q6ZVC0 841 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 CABP7Q86V35 215 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 LRRC6Q86X45 466 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 POLR1BQ9H9Y6 1135 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 ING3Q9NXR8 418 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 GTF3C4Q9UKN8 822 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 PCDHB13Q9Y5F0 798 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 NCOA1Q15788 1441 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 A0A087WWV3 80 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 MIF4GDA9UHW6 222 aaKnown RBP9.46□□□□□ -0.89
COL6A3-210ENST00000473258 TKTP29401 623 aaKnown RBP9.46□□□□□ -0.89
COL6A3-210ENST00000473258 RCVRNP35243 200 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 TALDO1P37837 337 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 ALDH5A1P51649 535 aaPredicted RBP9.46□□□□□ -0.89
COL6A3-210ENST00000473258 CHN2P52757 468 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 TRAF3Q13114 568 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 IFIT5Q13325 482 aaKnown RBP9.46□□□□□ -0.89
COL6A3-210ENST00000473258 BLMHQ13867 455 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 ZNF846Q147U1 533 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 ZMYM1Q5SVZ6 1142 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 MIS18BP1Q6P0N0 1132 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 RBM44Q6ZP01 1051 aaKnown RBP9.46□□□□□ -0.89
COL6A3-210ENST00000473258 FGD2Q7Z6J4 655 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 CCDC28AQ8IWP9 274 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 BEST2Q8NFU1 509 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 CSRNP1Q96S65 589 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 EHD1Q9H4M9 534 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 BARX2Q9UMQ3 279 aaPredicted RBP9.46□□□□□ -0.89
COL6A3-210ENST00000473258 TNNQ9UQP3 1299 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 CCDC88BA6NC98 1476 aa9.46□□□□□ -0.89
COL6A3-210ENST00000473258 MAGEB16A2A368 324 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 FOXN3O00409 490 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 AIM2O14862 343 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 NPTXRO95502 500 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 ATP1A1P05023 1023 aaKnown RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 COPAP53621 1224 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 CUL4AQ13619 759 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 KRT39Q6A163 491 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 PDZD4Q76G19 769 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 NECAB2Q7Z6G3 386 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 RNF34Q969K3 372 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 PLEKHA5Q9HAU0 1116 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 KIAA1586Q9HCI6 787 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 ABHD10Q9NUJ1 306 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 GTSE1Q9NYZ3 720 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 SRP68Q9UHB9 627 aaKnown RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 COQ6Q9Y2Z9 468 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 H7C0S8 307 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 GAS2O43903 313 aaKnown RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 MBD4O95243 580 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF12P17014 697 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 XPAP23025 273 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 MAPK4P31152 587 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 CHRNA3P32297 505 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 GSCP56915 257 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 CCZ1BP86790 482 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 CCZ1P86791 482 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 PRPF39Q86UA1 669 aaKnown RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 USP13Q92995 863 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 ALKBH8Q96BT7 664 aaKnown RBP9.46□□□□□ -0.9
COL6A3-210ENST00000473258 TUBGCP5Q96RT8 1024 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 XKR8Q9H6D3 395 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 CYP39A1Q9NYL5 469 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 FADS3Q9Y5Q0 445 aa9.46□□□□□ -0.9
COL6A3-210ENST00000473258 IRF6O14896 467 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 PRKACBP22694 351 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ADCY7P51828 1080 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 MAN2A1Q16706 1144 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 RBM20Q5T481 1227 aaKnown RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 WDR93Q6P2C0 686 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 TMEM53Q6P2H8 277 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 CCDC33Q8N5R6 958 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 MAGEC3Q8TD91 643 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 VTI1AQ96AJ9 217 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 IRF2BPLQ9H1B7 796 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 SYNDIG1Q9H7V2 258 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ABCB10Q9NRK6 738 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 RCOR1Q9UKL0 485 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 MROH7Q68CQ1 1323 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 USP12O75317 370 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 IL6P05231 212 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 FYNP06241 537 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ITGALP20701 1170 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 FGFR2P21802 821 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 CASP4P49662 377 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 POLGP54098 1239 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 NLRP11P59045 1033 aaKnown RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ROPN1BQ9BZX4 212 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ROPN1Q9HAT0 212 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ANGEL1Q9UNK9 670 aaKnown RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms