RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 KLHL5Q96PQ7 755 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 ADPGKQ9BRR6 497 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 MMTAG2Q9BU76 263 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 DZANK1Q9NVP4 752 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 SNTG2Q9NY99 539 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 VWA8A3KMH1 1905 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 ZMYM2Q9UBW7 1377 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 VWA3AA6NCI4 1184 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 CCDC169A6NNP5 214 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 RECQL4O94761 1208 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 ASGR2P07307 311 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 CNPP09543 421 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 MTHFRP42898 656 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 PEX3P56589 373 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 LARP1BQ659C4 914 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 KCNK18Q7Z418 384 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 CABP7Q86V35 215 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 PPFIBP1Q86W92 1011 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 RUSC1Q9BVN2 902 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 COLEC11Q9BWP8 271 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 CACNG4Q9UBN1 327 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 SORCS3Q9UPU3 1222 aa17.32■□□□□ 0.36
CCDC88B-205ENST00000472524 USP34Q70CQ2 3546 aa17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 HIP1RO75146 1068 aa17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 GLUD2P49448 558 aa17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 EFNA5P52803 228 aa17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 KIAA1841Q6NSI8 718 aa17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 TMC5Q6UXY8 1006 aa17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 PLIN2Q99541 437 aa17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 LIMD1Q9UGP4 676 aa17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 GDAQ9Y2T3 454 aa17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 ZDBF2Q9HCK1 2354 aa17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 PDCD11Q14690 1871 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-205ENST00000472524 DOCK6Q96HP0 2047 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 CASTOR2A6NHX0 329 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 K7ERI5 159 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 LILRB3O75022 631 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 NPTX2P47972 431 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 CLCN4P51793 760 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 DMP1Q13316 513 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 DCAF4L1Q3SXM0 396 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 ATAT1Q5SQI0 421 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 NT5DC1Q5TFE4 455 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 ATF7IP2Q5U623 682 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 RINT1Q6NUQ1 792 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 FUT10Q6P4F1 479 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 UBALD2Q8IYN6 164 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 RNF168Q8IYW5 571 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 DAW1Q8N136 415 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 TDRD5Q8NAT2 981 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 CDK5RAP3Q96JB5 506 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 B3GALT6Q96L58 329 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 SSX2IPQ9Y2D8 614 aa17.3■□□□□ 0.36
CCDC88B-205ENST00000472524 PHLPP2Q6ZVD8 1323 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 H0Y858 1186 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 PTGESO14684 152 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 RAD51AP2Q09MP3 1159 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 TUSC3Q13454 348 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 C1orf186Q6ZWK4 172 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 ZDHHC14Q8IZN3 488 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 HASPINQ8TF76 798 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 DRC1Q96MC2 740 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 PNMA5Q96PV4 448 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 PAAF1Q9BRP4 392 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 GPR62Q9BZJ7 368 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 CXCL16Q9H2A7 254 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 SFXN1Q9H9B4 322 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 KMT5AQ9NQR1 393 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 ADAM28Q9UKQ2 775 aa17.29■□□□□ 0.36
CCDC88B-205ENST00000472524 VPS37CA5D8V6 355 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 SFI1A8K8P3 1242 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 TEX28O15482 410 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 TADA2AO75478 443 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 EFEMP2O95967 443 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 THP07101 528 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 ADH1AP07327 375 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 MYBP10242 640 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 DSG1Q02413 1049 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 MAPK7Q13164 816 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 HSP90AA2PQ14568 343 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 HYIQ5T013 277 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 KIAA0319Q5VV43 1072 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 ARL6IP4Q66PJ3 421 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 GLYCTKQ8IVS8 523 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 TMEM105Q8N8V8 129 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 ATOH1Q92858 354 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 NT5C3AQ9H0P0 336 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 MAN1C1Q9NR34 630 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 USTQ9Y2C2 406 aa17.28■□□□□ 0.36
CCDC88B-205ENST00000472524 DOCK8Q8NF50 2099 aa17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 KMT2EQ8IZD2 1858 aa17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 SLC16A4O15374 487 aa17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 USP41Q3LFD5 358 aa17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 ZNF568Q3ZCX4 644 aa17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 GLRA4Q5JXX5 417 aa17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 TAS1R3Q7RTX0 852 aa17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 APBB1IPQ7Z5R6 666 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 GPR149Q86SP6 731 aa17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 RIN2Q8WYP3 895 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 MRPL4Q9BYD3 311 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms