RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 OR5B17Q8NGF7 314 aa10.79□□□□□ -0.68
SF3A1-207ENST00000471342 CCDC47Q96A33 483 aaKnown RBP10.79□□□□□ -0.68
SF3A1-207ENST00000471342 ADAM2Q99965 735 aa10.79□□□□□ -0.68
SF3A1-207ENST00000471342 FAM213AQ9BRX8 229 aa10.79□□□□□ -0.68
SF3A1-207ENST00000471342 IFIH1Q9BYX4 1025 aaKnown RBP10.79□□□□□ -0.68
SF3A1-207ENST00000471342 PRO3102Q9H379 93 aa10.79□□□□□ -0.68
SF3A1-207ENST00000471342 PDE11AQ9HCR9 933 aa10.79□□□□□ -0.68
SF3A1-207ENST00000471342 FAM105AQ9NUU6 356 aa10.79□□□□□ -0.68
SF3A1-207ENST00000471342 MYH11P35749 1972 aa10.79□□□□□ -0.68
SF3A1-207ENST00000471342 KAT6AQ92794 2004 aa10.79□□□□□ -0.68
SF3A1-207ENST00000471342 A0A1B0GTH6 734 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 BICDL2A1A5D9 508 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 LACTBL1A8MY62 500 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 RNF225M0QZC1 329 aaPredicted RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 PMM2O15305 246 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 SLC16A3O15427 465 aaKnown RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 TLR3O15455 904 aaKnown RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CLDN3O15551 220 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 OFD1O75665 1012 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 EFEMP2O95967 443 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 SFPQP23246 707 aaKnown RBP eCLIP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 ABCD1P33897 745 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CYP2J2P51589 502 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 SOX4Q06945 474 aaPredicted RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 ENPEPQ07075 957 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 NFX1Q12986 1120 aaKnown RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 STRN3Q13033 797 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 NOLC1Q14978 699 aaKnown RBP eCLIP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 PSMD6Q15008 389 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 SNRNP35Q16560 246 aaKnown RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CBWD6Q4V339 395 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CBWD3Q5JTY5 395 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CLLU1OSQ5K130 101 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CBWD5Q5RIA9 395 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 TMEM240Q5SV17 173 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 SLFN12LQ6IEE8 588 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 ARMCX5Q6P1M9 558 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 FRMD5Q7Z6J6 570 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 GPD1LQ8N335 351 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 RDH13Q8NBN7 331 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 POMGNT1Q8WZA1 660 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 SEMA4DQ92854 862 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 BADQ92934 168 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CCDC51Q96ER9 411 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 SNX27Q96L92 541 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CNOT6LQ96LI5 555 aaKnown RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 RTN4Q9NQC3 1192 aaKnown RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 SNTG2Q9NY99 539 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CXXC1Q9P0U4 656 aaPredicted RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CNTN3Q9P232 1028 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 SIX4Q9UIU6 781 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 EXOC7Q9UPT5 735 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 PIN4Q9Y237 131 aaKnown RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 NOD1Q9Y239 953 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 PCDHB2Q9Y5E7 798 aa10.78□□□□□ -0.68
SF3A1-207ENST00000471342 LAMA2P24043 3122 aaKnown RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 TNRC18O15417 2968 aaPredicted RBP10.78□□□□□ -0.68
SF3A1-207ENST00000471342 CCDC85CA6NKD9 419 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 N4BP3O15049 544 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 EPHB6O15197 1021 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 CALUO43852 315 aaPredicted RBP10.77□□□□□ -0.69
SF3A1-207ENST00000471342 NOL4O94818 638 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 CST3P01034 146 aaPredicted RBP10.77□□□□□ -0.69
SF3A1-207ENST00000471342 TRIM49P0CI25 452 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 TRIM49CP0CI26 452 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 CXCL8P10145 99 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 ACRP10323 421 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 KCNE1P15382 129 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 SYN1P17600 705 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 AKAP5P24588 427 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 GATMP50440 423 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 DEFB103AP81534 67 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 FANCCQ00597 558 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 APBA1Q02410 837 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 PAK2Q13177 524 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 ZNF568Q3ZCX4 644 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 NOTUMQ6P988 496 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 STXBP4Q6ZWJ1 553 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 HS2ST1Q7LGA3 356 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 THNSL1Q8IYQ7 743 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 SYCP3Q8IZU3 236 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 GOLGA5Q8TBA6 731 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 TMC2Q8TDI7 906 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 LPPQ93052 612 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 ZNF689Q96CS4 500 aaPredicted RBP10.77□□□□□ -0.69
SF3A1-207ENST00000471342 ZFP42Q96MM3 310 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 TMEM117Q9H0C3 514 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 SIX2Q9NPC8 291 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 ANKFY1Q9P2R3 1169 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 DACH1Q9UI36 760 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 AJAP1Q9UKB5 411 aaPredicted RBP10.77□□□□□ -0.69
SF3A1-207ENST00000471342 SIK3Q9Y2K2 1263 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 COQ4Q9Y3A0 265 aa10.77□□□□□ -0.69
SF3A1-207ENST00000471342 KCNJ18B7U540 433 aa10.76□□□□□ -0.69
SF3A1-207ENST00000471342 PPEF2O14830 753 aa10.76□□□□□ -0.69
SF3A1-207ENST00000471342 KIAA0391O15091 583 aaKnown RBP10.76□□□□□ -0.69
SF3A1-207ENST00000471342 CETN3O15182 167 aa10.76□□□□□ -0.69
SF3A1-207ENST00000471342 RECQL4O94761 1208 aa10.76□□□□□ -0.69
SF3A1-207ENST00000471342 ARHGEF15O94989 841 aa10.76□□□□□ -0.69
SF3A1-207ENST00000471342 KIF20AO95235 890 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms