RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 TRPM4Q8TD43 1214 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 CNKSR2Q8WXI2 1034 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 SEC14L1Q92503 715 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 MAGOHBQ96A72 148 aaKnown RBP20.51■□□□□ 0.87
VIM-203ENST00000469543 ERP44Q9BS26 406 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 POLR3FQ9H1D9 316 aaPredicted RBP20.51■□□□□ 0.87
VIM-203ENST00000469543 MAP3K20Q9NYL2 800 aaKnown RBP20.51■□□□□ 0.87
VIM-203ENST00000469543 SLC9A2Q9UBY0 812 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 DAAM1Q9Y4D1 1078 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 ATP8B3O60423 1300 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 SPOPO43791 374 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 MYZAPP0CAP1 466 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 DSG3P32926 999 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 LSP1P33241 339 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 NLRP11P59045 1033 aaKnown RBP20.51■□□□□ 0.87
VIM-203ENST00000469543 DUPD1Q68J44 220 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 SEPT14Q6ZU15 432 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 CD302Q8IX05 232 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 TMEM174Q8WUU8 243 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 MFSD14AQ96MC6 490 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 NT5C1BQ96P26 610 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 EXOC7Q9UPT5 735 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 DNAH12Q6ZR08 3092 aa20.51■□□□□ 0.87
VIM-203ENST00000469543 GPC3P51654 580 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 IWS1Q96ST2 819 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 FMO2Q99518 471 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 PDLIM7Q9NR12 457 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 ZDHHC18Q9NUE0 388 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 TTLL13PA6NNM8 815 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 O00370 1275 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 CLSTN1O94985 981 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 EDN1P05305 212 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 TNNI1P19237 187 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 EEPD1Q7L9B9 569 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 FBXL18Q96ME1 805 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 PPANQ9NQ55 473 aaKnown RBP20.5■□□□□ 0.87
VIM-203ENST00000469543 CNOT8Q9UFF9 292 aaKnown RBP20.5■□□□□ 0.87
VIM-203ENST00000469543 NOVA2Q9UNW9 492 aaKnown RBP20.5■□□□□ 0.87
VIM-203ENST00000469543 COQ4Q9Y3A0 265 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 ZNF541Q9H0D2 1346 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 SMIM23A6NLE4 172 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 NDUFAB1O14561 156 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 PDE6CP51160 858 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 CDR2Q01850 454 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 ABHD15Q6UXT9 468 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 KDM7AQ6ZMT4 941 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 PASD1Q8IV76 773 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 GPD1LQ8N335 351 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 KIFAP3Q92845 792 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 LRRC45Q96CN5 670 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 GPRASP2Q96D09 838 aa20.5■□□□□ 0.87
VIM-203ENST00000469543 LOXHD1Q8IVV2 1947 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 RPL21P46778 160 aaKnown RBP20.49■□□□□ 0.87
VIM-203ENST00000469543 SNX1Q13596 522 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 ODF2Q5BJF6 829 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 CCDC137Q6PK04 289 aaKnown RBP20.49■□□□□ 0.87
VIM-203ENST00000469543 CD101Q93033 1021 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 ATP6V0A1Q93050 837 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 FAM118BQ9BPY3 351 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 WDR81Q562E7 1941 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 KIAA0391O15091 583 aaKnown RBP20.49■□□□□ 0.87
VIM-203ENST00000469543 PSAPP07602 524 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 RARAP10276 462 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 HARSP12081 509 aaKnown RBP20.49■□□□□ 0.87
VIM-203ENST00000469543 GZMAP12544 262 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 PTGIRP43119 386 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 C11orf63Q6NUN7 778 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 UBL4BQ8N7F7 174 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 EPB41L4BQ9H329 900 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 ANKFY1Q9P2R3 1169 aa20.49■□□□□ 0.87
VIM-203ENST00000469543 ZNFX1Q9P2E3 1918 aaKnown RBP20.48■□□□□ 0.87
VIM-203ENST00000469543 GOLGA6L10A0A0M3HER8 536 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 GOLGA6L10A6NI86 522 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 MAPK13O15264 365 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 CLDN3O15551 220 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 SF3B2Q13435 895 aaKnown RBP20.48■□□□□ 0.87
VIM-203ENST00000469543 DRP2Q13474 957 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 ZDHHC24Q6UX98 284 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 C1orf54Q8WWF1 131 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 HERPUD2Q9BSE4 406 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 DGAT1O75907 488 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 GJB6O95452 261 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 BAG6P46379 1132 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 ASAP3Q8TDY4 903 aa20.48■□□□□ 0.87
VIM-203ENST00000469543 LRRIQ4A6NIV6 560 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 RRM1P23921 792 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 NF2P35240 595 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 MDH1P40925 334 aaKnown RBP20.47■□□□□ 0.87
VIM-203ENST00000469543 LIG4P49917 911 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 POLGP54098 1239 aaPredicted RBP20.47■□□□□ 0.87
VIM-203ENST00000469543 HADHBP55084 474 aaKnown RBP20.47■□□□□ 0.87
VIM-203ENST00000469543 TGFB2P61812 414 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 KRT71Q3SY84 523 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 FMNL3Q8IVF7 1028 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 MDM1Q8TC05 714 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 SPIRE2Q8WWL2 714 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 ATG4AQ8WYN0 398 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 ZNF668Q96K58 619 aaPredicted RBP20.47■□□□□ 0.87
VIM-203ENST00000469543 TIPINQ9BVW5 301 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 TEX13BQ9BXU2 312 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms