RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 PATJQ8NI35 1801 aa16.11■□□□□ 0.17
CXCR4-203ENST00000466288 MAP1BP46821 2468 aaKnown RBP16.11■□□□□ 0.17
CXCR4-203ENST00000466288 CCL16O15467 120 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 ASAP2O43150 1006 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 TADA2AO75478 443 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 CPA1P15085 419 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 PTENP60484 403 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 AMHR2Q16671 573 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 PPM1LQ5SGD2 360 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 LIN9Q5TKA1 542 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 TPRG1Q6ZUI0 275 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 NPAS3Q8IXF0 933 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 LNX1Q8TBB1 728 aaPredicted RBP16.1■□□□□ 0.17
CXCR4-203ENST00000466288 PAAF1Q9BRP4 392 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 SLC26A6Q9BXS9 759 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 FAM126AQ9BYI3 521 aaPredicted RBP16.1■□□□□ 0.17
CXCR4-203ENST00000466288 C22orf23Q9BZE7 217 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 SH3GLB2Q9NR46 395 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 CACNG4Q9UBN1 327 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 GMEB2Q9UKD1 530 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 VAV3Q9UKW4 847 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 MIA3Q5JRA6 1907 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 MTCL1Q9Y4B5 1905 aaKnown RBP16.1■□□□□ 0.17
CXCR4-203ENST00000466288 USP24Q9UPU5 2620 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 M0R2N6 131 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 NCAM2O15394 837 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 HMGB1P09429 215 aaKnown RBP16.1■□□□□ 0.17
CXCR4-203ENST00000466288 TDGF1P13385 188 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 AKAP5P24588 427 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 NLRP5P59047 1200 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 GRIK3Q13003 919 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 MTAPQ13126 283 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 PPP2R5CQ13362 524 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 KRT32Q14532 448 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 EMC2Q15006 297 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 MOXD1Q6UVY6 613 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 Q6ZUG5 572 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 TCP11Q8WWU5 503 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 PIK3R5Q8WYR1 880 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 BRF1Q92994 677 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 PCDHA4Q9UN74 947 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 POLIQ9UNA4 740 aa16.1■□□□□ 0.17
CXCR4-203ENST00000466288 SF3B1O75533 1304 aaKnown RBP eCLIP16.1■□□□□ 0.17
CXCR4-203ENST00000466288 MYH15Q9Y2K3 1946 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 ASPMQ8IZT6 3477 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 DOCK6Q96HP0 2047 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 ADAM12O43184 909 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 SLC37A4O43826 429 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 DKC1O60832 514 aaKnown RBP eCLIP16.09■□□□□ 0.17
CXCR4-203ENST00000466288 XYLBO75191 536 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 P4HBP07237 508 aaKnown RBP16.09■□□□□ 0.17
CXCR4-203ENST00000466288 POU2F2P09086 479 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 IFNAR1P17181 557 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 FGD1P98174 961 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 ADCY1Q08828 1119 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 SPEM2Q0P670 501 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 HSP90AA2PQ14568 343 aaPredicted RBP16.09■□□□□ 0.17
CXCR4-203ENST00000466288 ZNF852Q6ZMS4 543 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 IFNLR1Q8IU57 520 aaPredicted RBP16.09■□□□□ 0.17
CXCR4-203ENST00000466288 ZNF687Q8N1G0 1237 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 TTPALQ9BTX7 342 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 TRIM6Q9C030 488 aaPredicted RBP16.09■□□□□ 0.17
CXCR4-203ENST00000466288 HCFC1R1Q9NWW0 138 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 DNMT3BQ9UBC3 853 aaKnown RBP16.09■□□□□ 0.17
CXCR4-203ENST00000466288 DDX25Q9UHL0 483 aaKnown RBP16.09■□□□□ 0.17
CXCR4-203ENST00000466288 KCNH3Q9ULD8 1083 aa16.09■□□□□ 0.17
CXCR4-203ENST00000466288 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.09■□□□□ 0.17
CXCR4-203ENST00000466288 INO80B-WBP1J3KQ70 363 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 SLC30A4O14863 429 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 ARF4P18085 180 aaPredicted RBP16.08■□□□□ 0.16
CXCR4-203ENST00000466288 YWHABP31946 246 aaKnown RBP16.08■□□□□ 0.16
CXCR4-203ENST00000466288 MBTD1Q05BQ5 628 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 NCBP1Q09161 790 aaKnown RBP16.08■□□□□ 0.16
CXCR4-203ENST00000466288 PSMD5Q16401 504 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 PPM1JQ5JR12 505 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 FAM171A1Q5VUB5 890 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 POTEHQ6S545 545 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 C4orf19Q8IY42 314 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 HACE1Q8IYU2 909 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 SLC7A14Q8TBB6 771 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 HASPINQ8TF76 798 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 PLA2G2FQ9BZM2 168 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 XPNPEP1Q9NQW7 623 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 HEBP1Q9NRV9 189 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 KLK14Q9P0G3 267 aa16.08■□□□□ 0.16
CXCR4-203ENST00000466288 ZMYM2Q9UBW7 1377 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 ZBTB39O15060 712 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 ECI2O75521 394 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 POU5F1BQ06416 359 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 MXD4Q14582 209 aaPredicted RBP16.07■□□□□ 0.16
CXCR4-203ENST00000466288 NPY5RQ15761 445 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 LPAL2Q16609 132 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 PABPC1LQ4VXU2 614 aaKnown RBP16.07■□□□□ 0.16
CXCR4-203ENST00000466288 AXDND1Q5T1B0 1012 aaPredicted RBP16.07■□□□□ 0.16
CXCR4-203ENST00000466288 MAMSTRQ6ZN01 415 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 NETO1Q8TDF5 533 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 MTRQ99707 1265 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 LXNQ9BS40 222 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 KCNMB3Q9NPA1 279 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 FRYQ5TBA9 3013 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms