RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 COASYQ13057 564 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 LONRF3Q496Y0 759 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 HERC4Q5GLZ8 1057 aaPredicted RBP12.98□□□□□ -0.33
VPS52-213ENST00000461743 L1TD1Q5T7N2 865 aaKnown RBP12.98□□□□□ -0.33
VPS52-213ENST00000461743 UNC13DQ70J99 1090 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 ZNF720Q7Z2F6 126 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 SPPL3Q8TCT6 385 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 TMEM169Q96HH4 297 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 ZFP42Q96MM3 310 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 APOL6Q9BWW8 343 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 STRA6Q9BX79 667 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 RNF39Q9H2S5 420 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 NRDE2Q9H7Z3 1164 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 TLR9Q9NR96 1032 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 SNTG2Q9NY99 539 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 CHMP5Q9NZZ3 219 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 ANKFY1Q9P2R3 1169 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 HCSTQ9UBK5 93 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 PARP2Q9UGN5 583 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 PUF60Q9UHX1 559 aaKnown RBP12.98□□□□□ -0.33
VPS52-213ENST00000461743 PCDHB13Q9Y5F0 798 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 A0A1B0GVL5 298 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 PVALEFA0A1B0GWK0 134 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 GRM6O15303 877 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 NCK2O43639 380 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 GALTP07902 379 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 AKAP5P24588 427 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 NMT1P30419 496 aaKnown RBP12.97□□□□□ -0.33
VPS52-213ENST00000461743 POU5F1Q01860 360 aaKnown RBP12.97□□□□□ -0.33
VPS52-213ENST00000461743 SLFN12LQ6IEE8 588 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 COLGALT2Q8IYK4 626 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 FSIP1Q8NA03 581 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 GSTCDQ8NEC7 633 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 POF1BQ8WVV4 589 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 IGSF21Q96ID5 467 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 TSPAN18Q96SJ8 248 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 TCHPQ9BT92 498 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 TSC2P49815 1807 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 XIRP2A4UGR9 3374 aa12.97□□□□□ -0.33
VPS52-213ENST00000461743 PLXNA3P51805 1871 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 GOLGA6L4A6NEF3 574 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 FSCN2O14926 492 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 GCNT3O95395 438 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 POMCP01189 267 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 THP07101 528 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 SLC11A1P49279 550 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 EHHADHQ08426 723 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 TUSC3Q13454 348 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 BMS1Q14692 1282 aaKnown RBP12.96□□□□□ -0.33
VPS52-213ENST00000461743 COL19A1Q14993 1142 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 XKR4Q5GH76 650 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 CHAMP1Q96JM3 812 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 SNX27Q96L92 541 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 UROC1Q96N76 676 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 ACAP3Q96P50 834 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 ACCSQ96QU6 501 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 CDCA3Q99618 268 aaPredicted RBP12.96□□□□□ -0.33
VPS52-213ENST00000461743 TMEM206Q9H813 350 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 ALG13Q9NP73 1137 aaKnown RBP12.96□□□□□ -0.33
VPS52-213ENST00000461743 NGRNQ9NPE2 291 aaKnown RBP12.96□□□□□ -0.33
VPS52-213ENST00000461743 SLC38A7Q9NVC3 462 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 CNTN3Q9P232 1028 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 SERTAD1Q9UHV2 236 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 COG5Q9UP83 839 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 USP20Q9Y2K6 914 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 GDAQ9Y2T3 454 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 STYXL1Q9Y6J8 313 aa12.96□□□□□ -0.33
VPS52-213ENST00000461743 NCOR1O75376 2440 aa12.96□□□□□ -0.34
VPS52-213ENST00000461743 A0A0B4J269 797 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 PTGESO14684 152 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 KIAA0391O15091 583 aaKnown RBP12.95□□□□□ -0.34
VPS52-213ENST00000461743 OGTO15294 1046 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 FAM189A1O60320 539 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 DDHD2O94830 711 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 CLTAP09496 248 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 KCNE1P15382 129 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 MATR3P43243 847 aaKnown RBP eCLIP12.95□□□□□ -0.34
VPS52-213ENST00000461743 AFF1P51825 1210 aaKnown RBP12.95□□□□□ -0.34
VPS52-213ENST00000461743 NDUFA8P51970 172 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 CAMK1Q14012 370 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 POSTNQ15063 836 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 FAM26FQ5R3K3 315 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 KANK3Q6NY19 840 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 SLC39A4Q6P5W5 647 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 ALKAL1Q6UXT8 129 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 DDX53Q86TM3 631 aaKnown RBP12.95□□□□□ -0.34
VPS52-213ENST00000461743 ZNF280BQ86YH2 543 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 MICALL1Q8N3F8 863 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 CEP120Q8N960 986 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 TMEM87AQ8NBN3 555 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 STAMQ92783 540 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 PPP1R10Q96QC0 940 aaKnown RBP12.95□□□□□ -0.34
VPS52-213ENST00000461743 MSTO1Q9BUK6 570 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 GBP3Q9H0R5 595 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 PLEKHA5Q9HAU0 1116 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 GDPD2Q9HCC8 539 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 THEGQ9P2T0 379 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 DNAJB4Q9UDY4 337 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 FAN1Q9Y2M0 1017 aa12.95□□□□□ -0.34
VPS52-213ENST00000461743 TMEM189-UBE2V1I3L0A0 370 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms