RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SGO2Q562F6 1265 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 FOXR2Q6PJQ5 311 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ARHGEF18Q6ZSZ5 1173 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 MTDHQ86UE4 582 aaKnown RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 NEDD1Q8NHV4 660 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 LRRC8CQ8TDW0 803 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 KIFAP3Q92845 792 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 RUNDC3BQ96NL0 473 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ROPN1BQ9BZX4 212 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 PSTPIP2Q9H939 334 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ROPN1Q9HAT0 212 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 NPHS2Q9NP85 383 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 UBN1Q9NPG3 1134 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 TYW1Q9NV66 732 aaKnown RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ANKIB1Q9P2G1 1089 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 R3HDM2Q9Y2K5 976 aaKnown RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 BCL9O00512 1426 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ESYT2A0FGR8 921 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 C2orf71A6NGG8 1288 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 PDXKO00764 312 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 NPTXRO95502 500 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ETS2P15036 469 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ADCY8P40145 1251 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 BTDP43251 543 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 RPS8P62241 208 aaKnown RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 PPP2R5EQ16537 467 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 TSNAXIP1Q2TAA8 658 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ZNF568Q3ZCX4 644 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 SNX30Q5VWJ9 437 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 TRMT10CQ7L0Y3 403 aaKnown RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 CYP2W1Q8TAV3 490 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 SCG3Q8WXD2 468 aaKnown RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 EZH1Q92800 747 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ZNF333Q96JL9 665 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 P2RX7Q99572 595 aaKnown RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 DIS3Q9Y2L1 958 aaKnown RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 KDM3AQ9Y4C1 1321 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 LAMB1P07942 1786 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 SGPL1O95470 568 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 SPATA31C1P0DKV0 1188 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 KCNA3P22001 575 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 SERPINB4P48594 390 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 STRN3Q13033 797 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 KPNB1Q14974 876 aaKnown RBP12.5□□□□□ -0.41
CPSF3-202ENST00000460593 GRIPAP1Q4V328 841 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 EAPPQ56P03 285 aaPredicted RBP12.5□□□□□ -0.41
CPSF3-202ENST00000460593 AGGF1Q8N302 714 aaeCLIP12.5□□□□□ -0.412e-7■■■■□ 23.2
CPSF3-202ENST00000460593 UBE2OQ9C0C9 1292 aaKnown RBP12.5□□□□□ -0.41
CPSF3-202ENST00000460593 PCIF1Q9H4Z3 704 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 MYO3BQ8WXR4 1341 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 AKR1B1P15121 316 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 PLEKHG4Q58EX7 1191 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 MYCT1Q8N699 235 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 ZSWIM2Q8NEG5 633 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 SLC5A5Q92911 643 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 FAM136AQ96C01 138 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 BORCS6Q96GS4 357 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.5□□□□□ -0.41
CPSF3-202ENST00000460593 BTG4Q9NY30 223 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 DNM3Q9UQ16 869 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 WASF2Q9Y6W5 498 aa12.5□□□□□ -0.41
CPSF3-202ENST00000460593 CHMP2AO43633 222 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 RRM1P23921 792 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 RPA3P35244 121 aaPredicted RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 GJC1P36383 396 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 IL9RQ01113 521 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 SLC1A5Q15758 541 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 PKN2Q16513 984 aaKnown RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 PARP6Q2NL67 630 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 DPP8Q6V1X1 898 aaPredicted RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 KBTBD2Q8IY47 623 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 RPGRQ92834 1020 aaKnown RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 FGD4Q96M96 766 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 NUP85Q9BW27 656 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 MTUS1Q9ULD2 1270 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 ZMYM2Q9UBW7 1377 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 CAPN9O14815 690 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 MAPK13O15264 365 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 TBCAO75347 108 aaKnown RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 RPL13P26373 211 aaKnown RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 CPA2P48052 419 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 GCLCP48506 637 aaPredicted RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 NEK3P51956 506 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 CACNA2D1P54289 1103 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 SLC5A9Q2M3M2 681 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 EPC2Q52LR7 807 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 ACSBG2Q5FVE4 666 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 HYIQ5T013 277 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 FAM182AQ5T1J6 154 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 CROCCP2Q86T23 111 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 RBBP8NLQ8NC74 664 aaPredicted RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 WDR60Q8WVS4 1066 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 CADM1Q9BY67 442 aaKnown RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 METTL14Q9HCE5 456 aaKnown RBP12.49□□□□□ -0.41
CPSF3-202ENST00000460593 APEX2Q9UBZ4 518 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 ANAPC5Q9UJX4 755 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 USH1CQ9Y6N9 552 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 CFAP69A5D8W1 941 aa12.49□□□□□ -0.41
CPSF3-202ENST00000460593 ACADSP16219 412 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms