RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 ZNF720Q7Z2F6 126 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 HAUS6Q7Z4H7 955 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 SFR1Q86XK3 245 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 PGBD4Q96DM1 585 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 ZNF668Q96K58 619 aaPredicted RBP9.56□□□□□ -0.88
COL28A1-205ENST00000453441 ADAM2Q99965 735 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 ADPGKQ9BRR6 497 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 TMX1Q9H3N1 280 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 TMEM206Q9H813 350 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 MINDY3Q9H8M7 445 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 MRPL44Q9H9J2 332 aaKnown RBP9.56□□□□□ -0.88
COL28A1-205ENST00000453441 TMEM161AQ9NX61 479 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 TRIOBPQ9H2D6 2365 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 ADGRA3Q8IWK6 1321 aa9.56□□□□□ -0.88
COL28A1-205ENST00000453441 C9IYK1 514 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 EIF3DO15371 548 aaKnown RBP eCLIP9.55□□□□□ -0.88
COL28A1-205ENST00000453441 GADD45BO75293 160 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-205ENST00000453441 TOM1L1O75674 476 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 ATP2A2P16615 1042 aaKnown RBP9.55□□□□□ -0.88
COL28A1-205ENST00000453441 ARF4P18085 180 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-205ENST00000453441 HOXA11P31270 313 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-205ENST00000453441 PPP1R2P41236 205 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 SMAD3P84022 425 aaKnown RBP9.55□□□□□ -0.88
COL28A1-205ENST00000453441 EHHADHQ08426 723 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 DPYDQ12882 1025 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 FOXC1Q12948 553 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 COASYQ13057 564 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 CUL4BQ13620 913 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 C9orf50Q5SZB4 431 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 PPP2R2DQ66LE6 453 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 SLFN12LQ6IEE8 588 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 MAP4K3Q8IVH8 894 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 TOP1MTQ969P6 601 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 GSDMAQ96QA5 445 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 ACCSQ96QU6 501 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 FIZ1Q96SL8 496 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 TRIM6Q9C030 488 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-205ENST00000453441 UBN1Q9NPG3 1134 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 FAM105AQ9NUU6 356 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 EXOC1Q9NV70 894 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 CGNQ9P2M7 1197 aaKnown RBP9.55□□□□□ -0.88
COL28A1-205ENST00000453441 LRFN2Q9ULH4 789 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 TBX20Q9UMR3 447 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 TNFSF13BQ9Y275 285 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 PCDHB7Q9Y5E2 793 aa9.55□□□□□ -0.88
COL28A1-205ENST00000453441 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-205ENST00000453441 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.54□□□□□ -0.88
COL28A1-205ENST00000453441 TNFRSF10AO00220 468 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 HNRNPDLO14979 420 aaKnown RBP9.54□□□□□ -0.88
COL28A1-205ENST00000453441 KIAA0391O15091 583 aaKnown RBP9.54□□□□□ -0.88
COL28A1-205ENST00000453441 RHOBTB3O94955 611 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 GJB5O95377 273 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 GCNT3O95395 438 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 RPN1P04843 607 aaKnown RBP9.54□□□□□ -0.88
COL28A1-205ENST00000453441 MCF2P10911 925 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 LIG1P18858 919 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 LIG4P49917 911 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 POU5F1Q01860 360 aaKnown RBP9.54□□□□□ -0.88
COL28A1-205ENST00000453441 L1TD1Q5T7N2 865 aaKnown RBP9.54□□□□□ -0.88
COL28A1-205ENST00000453441 ATF7IP2Q5U623 682 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 MRPL10Q7Z7H8 261 aaKnown RBP9.54□□□□□ -0.88
COL28A1-205ENST00000453441 ECHDC2Q86YB7 292 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 HERC6Q8IVU3 1022 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 MYOCDQ8IZQ8 938 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 GOLGA5Q8TBA6 731 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 LINC01599Q8WXQ3 324 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 STAMQ92783 540 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 SMARCE1Q969G3 411 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 BICD1Q96G01 975 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 RAD9AQ99638 391 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 ACO2Q99798 780 aaKnown RBP9.54□□□□□ -0.88
COL28A1-205ENST00000453441 KIFC3Q9BVG8 833 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 STRA6Q9BX79 667 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 OSBPL7Q9BZF2 842 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 BLZF1Q9H2G9 400 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 LMBRD1Q9NUN5 540 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 INSL6Q9Y581 213 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 PCDHA11Q9Y5I1 949 aa9.54□□□□□ -0.88
COL28A1-205ENST00000453441 TMEM265A0A087WTH1 108 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 CLDN3O15551 220 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 B4GALT5O43286 388 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 KLRC4O43908 158 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 MGEA5O60502 916 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 CSDE1O75534 798 aaKnown RBP9.53□□□□□ -0.88
COL28A1-205ENST00000453441 F12P00748 615 aaPredicted RBP9.53□□□□□ -0.88
COL28A1-205ENST00000453441 FGFR4P22455 802 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 PROZP22891 400 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 NMT1P30419 496 aaKnown RBP9.53□□□□□ -0.88
COL28A1-205ENST00000453441 HTRA4P83105 476 aaPredicted RBP9.53□□□□□ -0.88
COL28A1-205ENST00000453441 BMT2Q1RMZ1 405 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 TCTN1Q2MV58 587 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 NT5DC1Q5TFE4 455 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 MPZL3Q6UWV2 235 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.53□□□□□ -0.88
COL28A1-205ENST00000453441 EPM2AIP1Q7L775 607 aaPredicted RBP9.53□□□□□ -0.88
COL28A1-205ENST00000453441 TAS1R3Q7RTX0 852 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 RTN4RL1Q86UN2 441 aaPredicted RBP9.53□□□□□ -0.88
COL28A1-205ENST00000453441 CMTR2Q8IYT2 770 aaKnown RBP9.53□□□□□ -0.88
COL28A1-205ENST00000453441 ABI1Q8IZP0 508 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 CRIPAKQ8N1N5 446 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms