RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, human

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF4-208	ENST00000452047	HFE2	Q6ZVN8	426 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	TAS1R3	Q7RTX0	852 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	CABP7	Q86V35	215 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	RABGGTA	Q92696	567 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	DRC1	Q96MC2	740 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	RIPOR3	Q96MK2	946 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	PAAF1	Q9BRP4	392 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	COLEC11	Q9BWP8	271 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	SFXN1	Q9H9B4	322 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	RXFP1	Q9HBX9	757 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	ARHGAP28	Q9P2N2	729 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	DAXX	Q9UER7	740 aa	Predicted RBP	13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	ADAM28	Q9UKQ2	775 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	SSX2IP	Q9Y2D8	614 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	VWA8	A3KMH1	1905 aa		13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047	MTCL1	Q9Y4B5	1905 aa	Known RBP	13.74	□□□□□ -0.21
CPSF4-208	ENST00000452047		K7ERI5	159 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	ADH1A	P07327	375 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	SP100	P23497	879 aa	Predicted RBP	13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	GUCY2C	P25092	1073 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	ZXDA	P98168	799 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	DMP1	Q13316	513 aa	Predicted RBP	13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	TMEM119	Q4V9L6	283 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	TMC5	Q6UXY8	1006 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	GPR65	Q8IYL9	337 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	KCTD17	Q8N5Z5	321 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	B3GALT6	Q96L58	329 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	NT5C3A	Q9H0P0	336 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	TMEM134	Q9H6X4	195 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	C17orf75	Q9HAS0	396 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	PTPRH	Q9HD43	1115 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	TNFSF13B	Q9Y275	285 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	NR2E1	Q9Y466	385 aa		13.73	□□□□□ -0.21
CPSF4-208	ENST00000452047	CASTOR2	A6NHX0	329 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	CCDC169	A6NNP5	214 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	C2CD4D	B7Z1M9	353 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	KIF4A	O95239	1232 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	TH	P07101	528 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	PLA2G5	P39877	138 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	SLC12A3	P55017	1021 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	ZRSR1	Q15695	479 aa	Known RBP	13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	PTPN21	Q16825	1174 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	USP41	Q3LFD5	358 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	BRAP	Q7Z569	592 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	GPR149	Q86SP6	731 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	SYT2	Q8N9I0	419 aa	Predicted RBP	13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	ACO2	Q99798	780 aa	Known RBP	13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	TIPIN	Q9BVW5	301 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	CDT1	Q9H211	546 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	KMT5A	Q9NQR1	393 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	MAN1C1	Q9NR34	630 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	TSHZ2	Q9NRE2	1034 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	GDA	Q9Y2T3	454 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	CIT	O14578	2027 aa		13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	PDCD11	Q14690	1871 aa	Known RBP	13.72	□□□□□ -0.21
CPSF4-208	ENST00000452047	MYO10	Q9HD67	2058 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	SF3B1	O75533	1304 aa	Known RBP eCLIP	13.71	□□□□□ -0.21	2e-6	■■■■■ 86.2
CPSF4-208	ENST00000452047	ABLIM1	O14639	778 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	PAPLN	O95428	1278 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	GLUD1	P00367	558 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	PROZ	P22891	400 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	RTP2	Q5QGT7	225 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	ATAT1	Q5SQI0	421 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	C15orf39	Q6ZRI6	1047 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	TRIM67	Q6ZTA4	783 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	BMP8A	Q7Z5Y6	402 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	CEP120	Q8N960	986 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	CMAS	Q8NFW8	434 aa	Predicted RBP	13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	LRRC15	Q8TF66	581 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	HASPIN	Q8TF76	798 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	AK8	Q96MA6	479 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	PPP1R10	Q96QC0	940 aa	Known RBP	13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	PLIN2	Q99541	437 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	NTPCR	Q9BSD7	190 aa	Known RBP	13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	MRPL4	Q9BYD3	311 aa	Known RBP	13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	KCND2	Q9NZV8	630 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	FNIP2	Q9P278	1114 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	UST	Q9Y2C2	406 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	RBM19	Q9Y4C8	960 aa	Known RBP	13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	KMT2E	Q8IZD2	1858 aa		13.71	□□□□□ -0.21
CPSF4-208	ENST00000452047	ZDBF2	Q9HCK1	2354 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	TMEM221	A6NGB7	291 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	SFI1	A8K8P3	1242 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047		M0R296	226 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	SLC16A4	O15374	487 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	SLC26A4	O43511	780 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	TADA2A	O75478	443 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	BRD1	O95696	1058 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	C1R	P00736	705 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	PLA2G4B	P0C869	781 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	GRM5	P41594	1212 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	GRIN1	Q05586	938 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	SIGLEC14	Q08ET2	396 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	RAD51AP2	Q09MP3	1159 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	ZNF568	Q3ZCX4	644 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	ARSH	Q5FYA8	562 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	GLRA4	Q5JXX5	417 aa		13.7	□□□□□ -0.22
CPSF4-208	ENST00000452047	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms