RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 TMEM199Q8N511 208 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 SLC44A5Q8NCS7 719 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 NUP133Q8WUM0 1156 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 SREK1Q8WXA9 508 aaKnown RBP7.07□□□□□ -1.28
USP49-205ENST00000448078 HERVK_113Q902F9 699 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 FERMT2Q96AC1 680 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 DDX11Q96FC9 970 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 SGSM3Q96HU1 749 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 SRPK1Q96SB4 655 aaKnown RBP7.07□□□□□ -1.28
USP49-205ENST00000448078 DNAJC2Q99543 621 aaKnown RBP7.07□□□□□ -1.28
USP49-205ENST00000448078 FEZ1Q99689 392 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 SLC28A3Q9HAS3 691 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 HOXC10Q9NYD6 342 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 HCFC2Q9Y5Z7 792 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 NCOR1O75376 2440 aa7.07□□□□□ -1.28
USP49-205ENST00000448078 ZSWIM8A7E2V4 1837 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 OTOFQ9HC10 1997 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 GPR75-ASB3A0A0A6YYF3 556 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 N4BP3O15049 544 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 KIAA0355O15063 1070 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 SRGAP3O43295 1099 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 BUB1BO60566 1050 aaPredicted RBP7.06□□□□□ -1.28
USP49-205ENST00000448078 HLA-DOAP06340 250 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 MED14OSP0DP75 135 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 RARBP10826 455 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 PI3P19957 117 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 FGFR2P21802 821 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 FPR2P25090 351 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 CDR1P51861 262 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 MBLAC2Q68D91 279 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 NPLOC4Q8TAT6 608 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 SUCLG2Q96I99 432 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 BICC1Q9H694 974 aaKnown RBP7.06□□□□□ -1.28
USP49-205ENST00000448078 BCAS3Q9H6U6 928 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 CNTD2Q9H8S5 307 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 CABP5Q9NP86 173 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 CLDND1Q9NY35 253 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 NRBP1Q9UHY1 535 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 MGAMO43451 1857 aa7.06□□□□□ -1.28
USP49-205ENST00000448078 MROH7Q68CQ1 1323 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 ARAP2Q8WZ64 1704 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 LAMA2P24043 3122 aaKnown RBP7.05□□□□□ -1.28
USP49-205ENST00000448078 TRIM43BA6NCK2 446 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 PQBP1O60828 265 aaKnown RBP7.05□□□□□ -1.28
USP49-205ENST00000448078 TIMP1P01033 207 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 GLI4P10075 376 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 CYP2C19P33261 490 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 IL15P40933 162 aaPredicted RBP7.05□□□□□ -1.28
USP49-205ENST00000448078 MVPQ14764 893 aaKnown RBP7.05□□□□□ -1.28
USP49-205ENST00000448078 CBX2Q14781 532 aaPredicted RBP7.05□□□□□ -1.28
USP49-205ENST00000448078 RABL6Q3YEC7 729 aaPredicted RBP7.05□□□□□ -1.28
USP49-205ENST00000448078 WDR63Q8IWG1 891 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 TEX11Q8IYF3 940 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 VGLL2Q8N8G2 317 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 NETO2Q8NC67 525 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 TRIM43Q96BQ3 446 aaPredicted RBP7.05□□□□□ -1.28
USP49-205ENST00000448078 LRFN3Q9BTN0 628 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 SPATA9Q9BWV2 254 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 PORCNQ9H237 461 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 PRDM12Q9H4Q4 367 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 SPC25Q9HBM1 224 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 CD320Q9NPF0 282 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 RAI14Q9P0K7 980 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 TMEFF2Q9UIK5 374 aaPredicted RBP7.05□□□□□ -1.28
USP49-205ENST00000448078 COG5Q9UP83 839 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 SPEF2Q9C093 1822 aa7.05□□□□□ -1.28
USP49-205ENST00000448078 PRUNE2Q8WUY3 3088 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 PIEZO1Q92508 2521 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 MROH7-TTC4A0A0A0MT08 1334 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 GAKO14976 1311 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 CIAO1O76071 339 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 NBPF7P0C2Y1 421 aaPredicted RBP7.04□□□□□ -1.28
USP49-205ENST00000448078 EXOSC9Q06265 439 aaKnown RBP7.04□□□□□ -1.28
USP49-205ENST00000448078 MAP4K2Q12851 820 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 LSAMPQ13449 338 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 FZD5Q13467 585 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 LRRC41Q15345 812 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 ACBD5Q5T8D3 534 aaPredicted RBP7.04□□□□□ -1.28
USP49-205ENST00000448078 CNKSR3Q6P9H4 555 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 PSRC1Q6PGN9 363 aaPredicted RBP7.04□□□□□ -1.28
USP49-205ENST00000448078 SPATC1Q76KD6 591 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 USP38Q8NB14 1042 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 PHF20Q9BVI0 1012 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 KRTAP9-2Q9BYQ4 174 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 MROH8Q9H579 483 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 TXNRD2Q9NNW7 524 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 XPNPEP3Q9NQH7 507 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 SIT1Q9Y3P8 196 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 BDP1A6H8Y1 2624 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 VCANP13611 3396 aa7.04□□□□□ -1.28
USP49-205ENST00000448078 COL2A1P02458 1487 aaPredicted RBP7.04□□□□□ -1.28
USP49-205ENST00000448078 DOCK3Q8IZD9 2030 aa7.03□□□□□ -1.28
USP49-205ENST00000448078 FGBP02675 491 aa7.03□□□□□ -1.28
USP49-205ENST00000448078 SCG5P05408 212 aa7.03□□□□□ -1.28
USP49-205ENST00000448078 ZSCAN22P10073 491 aaPredicted RBP7.03□□□□□ -1.28
USP49-205ENST00000448078 PABPC1P11940 636 aaKnown RBP7.03□□□□□ -1.28
USP49-205ENST00000448078 FCER1AP12319 257 aa7.03□□□□□ -1.28
USP49-205ENST00000448078 LCP1P13796 627 aa7.03□□□□□ -1.28
USP49-205ENST00000448078 CFPP27918 469 aa7.03□□□□□ -1.28
USP49-205ENST00000448078 MECOMQ03112 1051 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms