RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 A8MXQ7 604 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 HNRNPRO43390 633 aaKnown RBP20.49■□□□□ 0.87
HMGA1-205ENST00000447654 ZNF189O75820 626 aaPredicted RBP20.49■□□□□ 0.87
HMGA1-205ENST00000447654 VAV1P15498 845 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 RGS2P41220 211 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 RHBDL3P58872 404 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 POLR2FP61218 127 aaKnown RBP20.49■□□□□ 0.87
HMGA1-205ENST00000447654 GSTO1P78417 241 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 MOGSQ13724 837 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 SEPT14Q6ZU15 432 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 CCDC80Q76M96 950 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 PNMA1Q8ND90 353 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 ANGPTL2Q9UKU9 493 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 BARX2Q9UMQ3 279 aaPredicted RBP20.49■□□□□ 0.87
HMGA1-205ENST00000447654 ANKRD31Q8N7Z5 1873 aa20.49■□□□□ 0.87
HMGA1-205ENST00000447654 C6orf229H3BNL8 230 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 CAPN9O14815 690 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 STRNO43815 780 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 FCER1AP12319 257 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 CPA3P15088 417 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 CHRNA3P32297 505 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 CDR2Q01850 454 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 R3HDM1Q15032 1099 aaKnown RBP20.48■□□□□ 0.87
HMGA1-205ENST00000447654 WDR72Q3MJ13 1102 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 KBTBD12Q3ZCT8 623 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 SLC45A4Q5BKX6 768 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 GALNT17Q6IS24 598 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 SPATA24Q86W54 205 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 ZNF398Q8TD17 642 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 CTNNBL1Q8WYA6 563 aaPredicted RBP20.48■□□□□ 0.87
HMGA1-205ENST00000447654 LSM14BQ9BX40 385 aaKnown RBP20.48■□□□□ 0.87
HMGA1-205ENST00000447654 MKNK2Q9HBH9 465 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 RHBDL2Q9NX52 303 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 DNAJB4Q9UDY4 337 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 NENFQ9UMX5 172 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 ZNF148Q9UQR1 794 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 MTMR7Q9Y216 660 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 ADGRA3Q8IWK6 1321 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 DDX3XO00571 662 aaKnown RBP eCLIP20.48■□□□□ 0.876e-37■■■□□ 18.5
HMGA1-205ENST00000447654 RIMBP2O15034 1052 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 CCDC22O60826 627 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 SCG2P13521 617 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 SLCO1A2P46721 670 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 RAPGEF1Q13905 1077 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 RBM26Q5T8P6 1007 aaKnown RBP20.48■□□□□ 0.87
HMGA1-205ENST00000447654 GPKOWQ92917 476 aaPredicted RBP eCLIP20.48■□□□□ 0.873e-8■■■■□ 26
HMGA1-205ENST00000447654 HAUS1Q96CS2 278 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 CLMNQ96JQ2 1002 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 CRAMP1Q96RY5 1269 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 PCYOX1Q9UHG3 505 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 NAGPAQ9UK23 515 aa20.48■□□□□ 0.87
HMGA1-205ENST00000447654 TTLL1O95922 423 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 BCRP11274 1271 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 PFKFB3Q16875 520 aaPredicted RBP20.47■□□□□ 0.87
HMGA1-205ENST00000447654 CYFIP1Q7L576 1253 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 DGKHQ86XP1 1220 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 STMN2Q93045 179 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 TANGO6Q9C0B7 1094 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 NT5C3AQ9H0P0 336 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 KCNK9Q9NPC2 374 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 TIMMDC1Q9NPL8 285 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 TCP11L1Q9NUJ3 509 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 MAD2L2Q9UI95 211 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 SNX24Q9Y343 169 aa20.47■□□□□ 0.87
HMGA1-205ENST00000447654 A0A0J9YVX5 310 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 CYTH3O43739 400 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 PRKCIP41743 596 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 CD97P48960 835 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 SERPINB8P50452 374 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 SESN3P58005 492 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 ZC2HC1CQ53FD0 456 aaPredicted RBP20.46■□□□□ 0.87
HMGA1-205ENST00000447654 C7orf43Q8WVR3 580 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 MXD3Q9BW11 206 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 CPVLQ9H3G5 476 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 LGALS13Q9UHV8 139 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 SNED1Q8TER0 1413 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 DDX60LQ5H9U9 1706 aaKnown RBP20.46■□□□□ 0.87
HMGA1-205ENST00000447654 FLT1P17948 1338 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 GFPT2O94808 682 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 TSPY3P0CV98 308 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 TSPY8P0CW00 308 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 BRAFP15056 766 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 PTGIRP43119 386 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 MARSP56192 900 aaKnown RBP20.46■□□□□ 0.87
HMGA1-205ENST00000447654 PIP4K2CQ8TBX8 421 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 ETNK2Q9NVF9 386 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 ARMCX3Q9UH62 379 aaPredicted RBP20.46■□□□□ 0.87
HMGA1-205ENST00000447654 COL4A3BPQ9Y5P4 624 aa20.46■□□□□ 0.87
HMGA1-205ENST00000447654 FAM205AQ6ZU69 1335 aa20.45■□□□□ 0.86
HMGA1-205ENST00000447654 PHF2O75151 1096 aa20.45■□□□□ 0.86
HMGA1-205ENST00000447654 TBX10O75333 385 aa20.45■□□□□ 0.86
HMGA1-205ENST00000447654 LDHCP07864 332 aa20.45■□□□□ 0.86
HMGA1-205ENST00000447654 H2AFZP0C0S5 128 aa20.45■□□□□ 0.86
HMGA1-205ENST00000447654 PLCG1P19174 1290 aa20.45■□□□□ 0.86
HMGA1-205ENST00000447654 GTF2IP78347 998 aa20.45■□□□□ 0.86
HMGA1-205ENST00000447654 ZCWPW2Q504Y3 356 aa20.45■□□□□ 0.86
HMGA1-205ENST00000447654 ALKBH5Q6P6C2 394 aaKnown RBP20.45■□□□□ 0.86
HMGA1-205ENST00000447654 H2AFVQ71UI9 128 aa20.45■□□□□ 0.86
HMGA1-205ENST00000447654 CABP7Q86V35 215 aa20.45■□□□□ 0.86
HMGA1-205ENST00000447654 VPS36Q86VN1 386 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms