RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 DHX8Q14562 1220 aaKnown RBP13.38□□□□□ -0.27
PTPRF-208ENST00000437607 MCM6Q14566 821 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 XKR3Q5GH77 459 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 RARS2Q5T160 578 aaKnown RBP13.38□□□□□ -0.27
PTPRF-208ENST00000437607 CES5AQ6NT32 575 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 ANO5Q75V66 913 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 KCNK18Q7Z418 384 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 ZBTB33Q86T24 672 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 GPBP1Q86WP2 473 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 C4orf19Q8IY42 314 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 SMARCE1Q969G3 411 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 CCDC47Q96A33 483 aaKnown RBP13.38□□□□□ -0.27
PTPRF-208ENST00000437607 PAGE5Q96GU1 130 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 TMEM169Q96HH4 297 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 IGSF21Q96ID5 467 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 NECTIN4Q96NY8 510 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 NACC1Q96RE7 527 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 GCOM2Q9BZD3 368 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-208ENST00000437607 BLOC1S4Q9NUP1 217 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 DNAJB4Q9UDY4 337 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 IRAK3Q9Y616 596 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 PTPRZ1P23471 2315 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-208ENST00000437607 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-208ENST00000437607 H0Y858 1186 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 MAFO75444 373 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-208ENST00000437607 OFD1O75665 1012 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 SLITRK3O94933 977 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 KRT18P05783 430 aaKnown RBP13.37□□□□□ -0.27
PTPRF-208ENST00000437607 ASGR2P07307 311 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 PRR29P0C7W0 189 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 CA8P35219 290 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 MTHFRP42898 656 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 SLC11A1P49279 550 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 AFF1P51825 1210 aaKnown RBP13.37□□□□□ -0.27
PTPRF-208ENST00000437607 MTMR3Q13615 1198 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 TWF2Q6IBS0 349 aaKnown RBP13.37□□□□□ -0.27
PTPRF-208ENST00000437607 KIAA1841Q6NSI8 718 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 RBM43Q6ZSC3 357 aaKnown RBP13.37□□□□□ -0.27
PTPRF-208ENST00000437607 DDX53Q86TM3 631 aaKnown RBP13.37□□□□□ -0.27
PTPRF-208ENST00000437607 ZNF410Q86VK4 478 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 RHPN2Q8IUC4 686 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 UBALD2Q8IYN6 164 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 TMEM105Q8N8V8 129 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 LRRC15Q8TF66 581 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 BHMT2Q9H2M3 363 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 IFT122Q9HBG6 1241 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 FAM105AQ9NUU6 356 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 KBTBD4Q9NVX7 518 aa13.37□□□□□ -0.27
PTPRF-208ENST00000437607 SUCLA2Q9P2R7 463 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-208ENST00000437607 WRAP73Q9P2S5 460 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-208ENST00000437607 PIN4Q9Y237 131 aaKnown RBP13.37□□□□□ -0.27
PTPRF-208ENST00000437607 GALR2O43603 387 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-208ENST00000437607 GFRA3O60609 400 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 ZNF623O75123 536 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 SFPQP23246 707 aaKnown RBP eCLIP13.36□□□□□ -0.273e-6■■□□□ 13
PTPRF-208ENST00000437607 YWHABP31946 246 aaKnown RBP13.36□□□□□ -0.27
PTPRF-208ENST00000437607 POLGP54098 1239 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-208ENST00000437607 CDC42EP1Q00587 391 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 NOMO2Q5JPE7 1267 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 PLA2G4FQ68DD2 849 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 SASS6Q6UVJ0 657 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 AGMOQ6ZNB7 445 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 ZNF280BQ86YH2 543 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 ZDHHC14Q8IZN3 488 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 PIGOQ8TEQ8 1089 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 STAMQ92783 540 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 ATOH1Q92858 354 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-208ENST00000437607 TRIM9Q9C026 710 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 BMP2KQ9NSY1 1161 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-208ENST00000437607 EXOC1Q9NV70 894 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 DZANK1Q9NVP4 752 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 RMND1Q9NWS8 449 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 KIAA1468Q9P260 1216 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 DBR1Q9UK59 544 aaKnown RBP13.36□□□□□ -0.27
PTPRF-208ENST00000437607 INPP5FQ9Y2H2 1132 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 VWA8A3KMH1 1905 aa13.36□□□□□ -0.27
PTPRF-208ENST00000437607 MIA3Q5JRA6 1907 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 TBCAO75347 108 aaKnown RBP13.35□□□□□ -0.27
PTPRF-208ENST00000437607 DDHD2O94830 711 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 CCDC192P0DO97 292 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 DNM2P50570 870 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 NUBP1P53384 320 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 SLC12A3P55017 1021 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 DPYDQ12882 1025 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 PTPN14Q15678 1187 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 STX1AQ16623 288 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 GLB1LQ6UWU2 654 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 OTUD6AQ7L8S5 288 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 CATSPER4Q7RTX7 472 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 TDRD5Q8NAT2 981 aaKnown RBP13.35□□□□□ -0.27
PTPRF-208ENST00000437607 RSPH1Q8WYR4 309 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 ERCC4Q92889 916 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-208ENST00000437607 NLRP4Q96MN2 994 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 GBP3Q9H0R5 595 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 BLZF1Q9H2G9 400 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 MINDY3Q9H8M7 445 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 ANKEF1Q9NU02 776 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 AGPAT5Q9NUQ2 364 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 KCND2Q9NZV8 630 aa13.35□□□□□ -0.27
PTPRF-208ENST00000437607 LIMD1Q9UGP4 676 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms