RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 FAM84AQ96KN4 292 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 SELENOSQ9BQE4 189 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 AZI2Q9H6S1 392 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 CNOT10Q9H9A5 744 aaKnown RBP12.67□□□□□ -0.38
CD44-209ENST00000433892 MTRF1LQ9UGC7 380 aaKnown RBP12.67□□□□□ -0.38
CD44-209ENST00000433892 MTUS1Q9ULD2 1270 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 USP20Q9Y2K6 914 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 TESPA1A2RU30 521 aaPredicted RBP12.67□□□□□ -0.38
CD44-209ENST00000433892 RGS16O15492 202 aaPredicted RBP12.67□□□□□ -0.38
CD44-209ENST00000433892 CLDN3O15551 220 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 DLATP10515 647 aaKnown RBP12.67□□□□□ -0.38
CD44-209ENST00000433892 CHN1P15882 459 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 SLCO1A2P46721 670 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 SMTNP53814 917 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 SNRPFP62306 86 aaKnown RBP12.67□□□□□ -0.38
CD44-209ENST00000433892 DMP1Q13316 513 aaPredicted RBP12.67□□□□□ -0.38
CD44-209ENST00000433892 SIX1Q15475 284 aaPredicted RBP12.67□□□□□ -0.38
CD44-209ENST00000433892 CCDC121Q6ZUS5 278 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 ANO5Q75V66 913 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 MAP4K3Q8IVH8 894 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 TATDN2Q93075 761 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 PGM2Q96G03 612 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 RMDN3Q96TC7 470 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 TMEM8AQ9HCN3 771 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 RAB20Q9NX57 234 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 GTF3C4Q9UKN8 822 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 EXOC7Q9UPT5 735 aa12.67□□□□□ -0.38
CD44-209ENST00000433892 WDR64B1ANS9 1081 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 CTNND1O60716 968 aaKnown RBP12.66□□□□□ -0.38
CD44-209ENST00000433892 GPC3P51654 580 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 CDR1P51861 262 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 RWDD2BP57060 319 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 ACTN3Q08043 901 aaPredicted RBP12.66□□□□□ -0.38
CD44-209ENST00000433892 CYP1B1Q16678 543 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 SPRED3Q2MJR0 410 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 ERMARDQ5T6L9 678 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 FKBP1CQ5VVH2 108 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 FAM83AQ86UY5 434 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 CCDC25Q86WR0 208 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 CCDC13Q8IYE1 715 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 FBXL13Q8NEE6 735 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 EPS8L3Q8TE67 593 aaKnown RBP12.66□□□□□ -0.38
CD44-209ENST00000433892 BSNDQ8WZ55 320 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 DDX1Q92499 740 aaKnown RBP12.66□□□□□ -0.38
CD44-209ENST00000433892 NT5C1BQ96P26 610 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 XPO6Q96QU8 1125 aaKnown RBP12.66□□□□□ -0.38
CD44-209ENST00000433892 PI4K2AQ9BTU6 479 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 TIPINQ9BVW5 301 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 OSBPL7Q9BZF2 842 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 SLC38A10Q9HBR0 1119 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 PARP2Q9UGN5 583 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 PGAP2Q9UHJ9 254 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 COQ4Q9Y3A0 265 aa12.66□□□□□ -0.38
CD44-209ENST00000433892 C5orf60A6NFR6 353 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 WDR46O15213 610 aaKnown RBP12.65□□□□□ -0.38
CD44-209ENST00000433892 GRIN3BO60391 1043 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 KRT5P13647 590 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 DRD4P21917 467 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 GBP1P32455 592 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 GKAP1Q5VSY0 366 aaPredicted RBP12.65□□□□□ -0.38
CD44-209ENST00000433892 SLC39A4Q6P5W5 647 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 RNF207Q6ZRF8 634 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 SV2AQ7L0J3 742 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 PHLDB2Q86SQ0 1253 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 CACNA2D3Q8IZS8 1091 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 C1orf54Q8WWF1 131 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 POMGNT1Q8WZA1 660 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 ADAM7Q9H2U9 754 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 KMT5AQ9NQR1 393 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 UVRAGQ9P2Y5 699 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 GOLGA6L7A0A1B0GV03 622 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 RIPK2O43353 540 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 MMP13P45452 471 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 JAK3P52333 1124 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 GHRHRQ02643 423 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 SF3A3Q12874 501 aaKnown RBP eCLIP12.65□□□□□ -0.38
CD44-209ENST00000433892 SNX1Q13596 522 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 PPP1R7Q15435 360 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 ACAD10Q6JQN1 1059 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 SUGP1Q8IWZ8 645 aaKnown RBP12.65□□□□□ -0.38
CD44-209ENST00000433892 KIFAP3Q92845 792 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 ART4Q93070 314 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 CHMP6Q96FZ7 201 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 PDCD2LQ9BRP1 358 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 FAM129AQ9BZQ8 928 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 TRIM7Q9C029 511 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 TAOK3Q9H2K8 898 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 PXMP2Q9NR77 195 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 ANKEF1Q9NU02 776 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 CNOT7Q9UIV1 285 aaKnown RBP12.65□□□□□ -0.38
CD44-209ENST00000433892 COL4A5P29400 1685 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 PASKQ96RG2 1323 aa12.65□□□□□ -0.38
CD44-209ENST00000433892 DNM1LO00429 736 aa12.64□□□□□ -0.39
CD44-209ENST00000433892 WNT10BO00744 389 aa12.64□□□□□ -0.39
CD44-209ENST00000433892 ECEL1O95672 775 aa12.64□□□□□ -0.39
CD44-209ENST00000433892 C6orf118Q5T5N4 469 aa12.64□□□□□ -0.39
CD44-209ENST00000433892 ARHGEF16Q5VV41 709 aa12.64□□□□□ -0.39
CD44-209ENST00000433892 SLC17A8Q8NDX2 589 aa12.64□□□□□ -0.39
CD44-209ENST00000433892 PSPC1Q8WXF1 523 aaKnown RBP12.64□□□□□ -0.39
CD44-209ENST00000433892 CENPTQ96BT3 561 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms