RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 EP400NLQ6ZTU2 488 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 SYDE1Q6ZW31 735 aaPredicted RBP12.12□□□□□ -0.47
USP4-205ENST00000431357 C4orf19Q8IY42 314 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 MDM1Q8TC05 714 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 ZNF653Q96CK0 615 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 FAM81BQ96LP2 452 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 KREMEN1Q96MU8 473 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 ZNF317Q96PQ6 595 aaPredicted RBP12.12□□□□□ -0.47
USP4-205ENST00000431357 SELENOSQ9BQE4 189 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 SLC40A1Q9NP59 571 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 CCPG1Q9ULG6 757 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 SMCHD1A6NHR9 2005 aa12.12□□□□□ -0.47
USP4-205ENST00000431357 CHUKO15111 745 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 CYP26A1O43174 497 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 ECEL1O95672 775 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 YWHABP31946 246 aaKnown RBP12.11□□□□□ -0.47
USP4-205ENST00000431357 TKFCQ3LXA3 575 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 FKBP1CQ5VVH2 108 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 MFSD5Q6N075 450 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 ZNF746Q6NUN9 644 aaPredicted RBP12.11□□□□□ -0.47
USP4-205ENST00000431357 ZDHHC14Q8IZN3 488 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 PPM1KQ8N3J5 372 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 PLEKHO2Q8TD55 490 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 TMC2Q8TDI7 906 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 ATXN2LQ8WWM7 1075 aaKnown RBP12.11□□□□□ -0.47
USP4-205ENST00000431357 CCT6BQ92526 530 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 NT5C1BQ96P26 610 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 NSRP1Q9H0G5 558 aaKnown RBP12.11□□□□□ -0.47
USP4-205ENST00000431357 SEMA4AQ9H3S1 761 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 LRRC4CQ9HCJ2 640 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 TMEM8AQ9HCN3 771 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 ANKEF1Q9NU02 776 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 INTS9Q9NV88 658 aaKnown RBP12.11□□□□□ -0.47
USP4-205ENST00000431357 WHRNQ9P202 907 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 ZNF70Q9UC06 446 aaPredicted RBP12.11□□□□□ -0.47
USP4-205ENST00000431357 TISP43B9A030 160 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 RASGRF2O14827 1237 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 FSCN2O14926 492 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 DNAJC8O75937 253 aaPredicted RBP12.11□□□□□ -0.47
USP4-205ENST00000431357 RARAP10276 462 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 CYP11B1P15538 503 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 MAP2K2P36507 400 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 CAP2P40123 477 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 JAK3P52333 1124 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 SIX1Q15475 284 aaPredicted RBP12.11□□□□□ -0.47
USP4-205ENST00000431357 ACAD10Q6JQN1 1059 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 RNF207Q6ZRF8 634 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 FAM43BQ6ZT52 329 aaPredicted RBP12.11□□□□□ -0.47
USP4-205ENST00000431357 ENOSF1Q7L5Y1 443 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 PIGWQ7Z7B1 504 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 KAT5Q92993 513 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 ADAM7Q9H2U9 754 aa12.11□□□□□ -0.47
USP4-205ENST00000431357 CCT8L1PA6NM43 557 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 SLC16A4O15374 487 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 ADRB2P07550 413 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 GSTA1P08263 222 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 ITIH2P19823 946 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 ATP5DP30049 168 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 SCTRP47872 440 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 PEX3P56589 373 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 PSMC5P62195 406 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 DLGAP5Q15398 846 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 SNRNP35Q16560 246 aaKnown RBP12.1□□□□□ -0.47
USP4-205ENST00000431357 MIGA2Q7L4E1 593 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 SLC47A2Q86VL8 602 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 MAP4K3Q8IVH8 894 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 RNF217Q8TC41 542 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 HELQQ8TDG4 1101 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 PARD3BQ8TEW8 1205 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 HOMER3Q9NSC5 361 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 SH3BP1Q9Y3L3 701 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 DNM1LO00429 736 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 PLSCR1O15162 318 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 SFNP31947 248 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 CAV1Q03135 178 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 XRCC4Q13426 336 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 MTMR1Q13613 665 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 AUHQ13825 339 aaKnown RBP12.1□□□□□ -0.47
USP4-205ENST00000431357 PPP1R7Q15435 360 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 SPDYE2Q495Y8 402 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 RSBN1LQ6PCB5 846 aaPredicted RBP12.1□□□□□ -0.47
USP4-205ENST00000431357 FBXL13Q8NEE6 735 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 GRK7Q8WTQ7 553 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 C7orf43Q8WVR3 580 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 PSPC1Q8WXF1 523 aaKnown RBP12.1□□□□□ -0.47
USP4-205ENST00000431357 TRIM11Q96F44 468 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 AGBL1Q96MI9 1066 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 QTRT2Q9H974 415 aaKnown RBP12.1□□□□□ -0.47
USP4-205ENST00000431357 FBXO28Q9NVF7 368 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 PKD2L1Q9P0L9 805 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 SAMD15Q9P1V8 674 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 TBX20Q9UMR3 447 aa12.1□□□□□ -0.47
USP4-205ENST00000431357 YDJCA8MPS7 323 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 PPIP5K2O43314 1243 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 ZC3H11AO75152 810 aaKnown RBP eCLIP12.09□□□□□ -0.47
USP4-205ENST00000431357 MYBL1P10243 752 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 SLC1A1P43005 524 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 IFI35P80217 286 aaPredicted RBP12.09□□□□□ -0.47
USP4-205ENST00000431357 ZYXQ15942 572 aaKnown RBP12.09□□□□□ -0.47
USP4-205ENST00000431357 KCTD19Q17RG1 926 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms