RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 KCNK12Q9HB15 430 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 RXFP1Q9HBX9 757 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.04■□□□□ 0.16
SDC1-204ENST00000429035 SNTG2Q9NY99 539 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 USP20Q9Y2K6 914 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 A0A1B0GUA9 196 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 STK25O00506 426 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 TGM5O43548 720 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 NARSO43776 548 aaKnown RBP16.03■□□□□ 0.16
SDC1-204ENST00000429035 EIF5BO60841 1220 aaKnown RBP16.03■□□□□ 0.16
SDC1-204ENST00000429035 CFHP08603 1231 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 CREMQ03060 361 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 TUSC3Q13454 348 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 MAPK6Q16659 721 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 TTC38Q5R3I4 469 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 HAUS3Q68CZ6 603 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 PADI6Q6TGC4 694 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 SIX5Q8N196 739 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 GSTCDQ8NEC7 633 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 RSAD2Q8WXG1 361 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 MYADMQ96S97 322 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 PAAF1Q9BRP4 392 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 WDR6Q9NNW5 1121 aaKnown RBP16.03■□□□□ 0.16
SDC1-204ENST00000429035 GDAQ9Y2T3 454 aa16.03■□□□□ 0.16
SDC1-204ENST00000429035 ZMYM2Q9UBW7 1377 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 MYH15Q9Y2K3 1946 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 TTLL13PA6NNM8 815 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 N4BP1O75113 896 aaKnown RBP16.02■□□□□ 0.16
SDC1-204ENST00000429035 KIF4AO95239 1232 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 XRCC6P12956 609 aaKnown RBP eCLIP16.02■□□□□ 0.16
SDC1-204ENST00000429035 CCT6AP40227 531 aaKnown RBP16.02■□□□□ 0.16
SDC1-204ENST00000429035 NBR1Q14596 966 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 RTP2Q5QGT7 225 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 NOSTRINQ8IVI9 506 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 ST13P5Q8NFI4 369 aaPredicted RBP16.02■□□□□ 0.16
SDC1-204ENST00000429035 POLR3CQ9BUI4 534 aaPredicted RBP16.02■□□□□ 0.16
SDC1-204ENST00000429035 POLD4Q9HCU8 107 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 CHST7Q9NS84 486 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 IGSF9Q9P2J2 1179 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 CA14Q9ULX7 337 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 NOL7Q9UMY1 257 aaKnown RBP16.02■□□□□ 0.16
SDC1-204ENST00000429035 LIMCH1Q9UPQ0 1083 aa16.02■□□□□ 0.16
SDC1-204ENST00000429035 MYH11P35749 1972 aa16.02■□□□□ 0.15
SDC1-204ENST00000429035 ST18O60284 1047 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 SEC24BO95487 1268 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 THP07101 528 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 RPA1P27694 616 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 NAMPTP43490 491 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 NUBP1P53384 320 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 PSMD5Q16401 504 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 GLRA4Q5JXX5 417 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 LIN9Q5TKA1 542 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 FAM171A1Q5VUB5 890 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 EEF1DP3Q658K8 133 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 ZNF707Q96C28 371 aaPredicted RBP16.01■□□□□ 0.15
SDC1-204ENST00000429035 IFT74Q96LB3 600 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 FZD8Q9H461 694 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 PLEKHA4Q9H4M7 779 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 ZDHHC7Q9NXF8 308 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 POLIQ9UNA4 740 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 CITO14578 2027 aa16.01■□□□□ 0.15
SDC1-204ENST00000429035 PTGESO14684 152 aa16■□□□□ 0.15
SDC1-204ENST00000429035 EFEMP2O95967 443 aa16■□□□□ 0.15
SDC1-204ENST00000429035 EDN1P05305 212 aa16■□□□□ 0.15
SDC1-204ENST00000429035 CYP11B2P19099 503 aa16■□□□□ 0.15
SDC1-204ENST00000429035 PPP2R5AQ15172 486 aa16■□□□□ 0.15
SDC1-204ENST00000429035 FAM187BQ17R55 369 aa16■□□□□ 0.15
SDC1-204ENST00000429035 CYP26C1Q6V0L0 522 aa16■□□□□ 0.15
SDC1-204ENST00000429035 SNX29Q8TEQ0 813 aa16■□□□□ 0.15
SDC1-204ENST00000429035 TTPALQ9BTX7 342 aa16■□□□□ 0.15
SDC1-204ENST00000429035 NT5C3AQ9H0P0 336 aa16■□□□□ 0.15
SDC1-204ENST00000429035 BHMT2Q9H2M3 363 aa16■□□□□ 0.15
SDC1-204ENST00000429035 FOXP1Q9H334 677 aaPredicted RBP16■□□□□ 0.15
SDC1-204ENST00000429035 FNIP2Q9P278 1114 aa16■□□□□ 0.15
SDC1-204ENST00000429035 ACKR2O00590 384 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 CLCN5P51795 746 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 HMGN5P82970 282 aaKnown RBP15.99■□□□□ 0.15
SDC1-204ENST00000429035 ORC2Q13416 577 aaPredicted RBP15.99■□□□□ 0.15
SDC1-204ENST00000429035 DCAF4L1Q3SXM0 396 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 PPM1LQ5SGD2 360 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 HDAC7Q8WUI4 952 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 PRKD2Q9BZL6 878 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 CCDC113Q9H0I3 377 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 CXCL16Q9H2A7 254 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 EPS15L1Q9UBC2 864 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 FBXW11Q9UKB1 542 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 MIA3Q5JRA6 1907 aa15.99■□□□□ 0.15
SDC1-204ENST00000429035 CCDC169A6NNP5 214 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 CCL16O15467 120 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 PI15O43692 258 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 ZMYND10O75800 440 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 C8AP07357 584 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 AOC1P19801 751 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 FSHRP23945 695 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 RBM25P49756 843 aaKnown RBP15.98■□□□□ 0.15
SDC1-204ENST00000429035 NTHL1P78549 312 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 ECM1Q16610 540 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 ATF7IP2Q5U623 682 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 GRASPQ7Z6J2 395 aaPredicted RBP15.98■□□□□ 0.15
SDC1-204ENST00000429035 FRMD5Q7Z6J6 570 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms