RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 CCDC136Q96JN2 1154 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 MNTQ99583 582 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 CPEB1Q9BZB8 566 aaKnown RBP3.2□□□□□ -1.9
PTPRC-208ENST00000427110 CDH19Q9H159 772 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 IFT122Q9HBG6 1241 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 CHPF2Q9P2E5 772 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 DNM3Q9UQ16 869 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 PCDHGA9Q9Y5G4 932 aaKnown RBP3.2□□□□□ -1.9
PTPRC-208ENST00000427110 PCDHGA8Q9Y5G5 932 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 PCDHGA7Q9Y5G6 932 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 PCDHGA6Q9Y5G7 932 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 PCDHGA3Q9Y5H0 932 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 PCDHGA2Q9Y5H1 932 aa3.2□□□□□ -1.9
PTPRC-208ENST00000427110 A0A1W2PR48 441 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 ADCY6O43306 1168 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 MTSS1O43312 755 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 HOXA3O43365 443 aaPredicted RBP3.19□□□□□ -1.9
PTPRC-208ENST00000427110 NDUFS2O75306 463 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 GNAT2P19087 354 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 C5AR1P21730 350 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 SLC16A1P53985 500 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 KIF23Q02241 960 aaPredicted RBP3.19□□□□□ -1.9
PTPRC-208ENST00000427110 UAP1L1Q3KQV9 507 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 FAM180AQ6UWF9 173 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 ABHD15Q6UXT9 468 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 ZNF627Q7L945 461 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 MYO1HQ8N1T3 1032 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 GLB1L3Q8NCI6 653 aaPredicted RBP3.19□□□□□ -1.9
PTPRC-208ENST00000427110 MDGA1Q8NFP4 955 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 FBXO18Q8NFZ0 1043 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 TSPEARQ8WU66 669 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 ST8SIA2Q92186 375 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 LARP4BQ92615 738 aaKnown RBP3.19□□□□□ -1.9
PTPRC-208ENST00000427110 LRGUKQ96M69 825 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 CPPED1Q9BRF8 314 aaPredicted RBP3.19□□□□□ -1.9
PTPRC-208ENST00000427110 ADI1Q9BV57 179 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 LSM14BQ9BX40 385 aaKnown RBP3.19□□□□□ -1.9
PTPRC-208ENST00000427110 RTFDC1Q9BY42 306 aaPredicted RBP3.19□□□□□ -1.9
PTPRC-208ENST00000427110 RHOBTB2Q9BYZ6 727 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 ENKD1Q9H0I2 346 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 ZNF703Q9H7S9 590 aaPredicted RBP3.19□□□□□ -1.9
PTPRC-208ENST00000427110 PARPBPQ9NWS1 579 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 GPRC5BQ9NZH0 403 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 SAP30BPQ9UHR5 308 aaKnown RBP3.19□□□□□ -1.9
PTPRC-208ENST00000427110 ANKRD6Q9Y2G4 727 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 ZMYM3Q14202 1370 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 XDHP47989 1333 aa3.19□□□□□ -1.9
PTPRC-208ENST00000427110 GRXCR1A8MXD5 290 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 TSPAN6O43657 245 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 DTNBO60941 627 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 MFAP3LO75121 409 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 ABLIM3O94929 683 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 ATF3P18847 181 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 VCAM1P19320 739 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 NR4A1P22736 598 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 APOBEC3AP31941 199 aaPredicted RBP3.18□□□□□ -1.9
PTPRC-208ENST00000427110 DUSP2Q05923 314 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 ADRM1Q16186 407 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 CSRP2Q16527 193 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 ANO4Q32M45 955 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 MUM1L1Q5H9M0 696 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 TMEM240Q5SV17 173 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 ANKS6Q68DC2 871 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 MFSD5Q6N075 450 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 MIGA2Q7L4E1 593 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 TAS1R1Q7RTX1 841 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 TPH2Q8IWU9 490 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 CMTR2Q8IYT2 770 aaKnown RBP3.18□□□□□ -1.9
PTPRC-208ENST00000427110 LILRA3Q8N6C8 439 aaPredicted RBP3.18□□□□□ -1.9
PTPRC-208ENST00000427110 REPS2Q8NFH8 660 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 MDM1Q8TC05 714 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 FATE1Q969F0 183 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 IL17RAQ96F46 866 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 PAWRQ96IZ0 340 aaKnown RBP3.18□□□□□ -1.9
PTPRC-208ENST00000427110 ZNF768Q9H5H4 540 aaKnown RBP3.18□□□□□ -1.9
PTPRC-208ENST00000427110 NRDE2Q9H7Z3 1164 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 DMRT3Q9NQL9 472 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 ZNF277Q9NRM2 450 aaPredicted RBP3.18□□□□□ -1.9
PTPRC-208ENST00000427110 AURKAIP1Q9NWT8 199 aaPredicted RBP3.18□□□□□ -1.9
PTPRC-208ENST00000427110 SORCS3Q9UPU3 1222 aa3.18□□□□□ -1.9
PTPRC-208ENST00000427110 GOLGA6CA6NDK9 693 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 GOLGA6BA6NDN3 693 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 WNT10BO00744 389 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 NRP1O14786 923 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 SUV39H1O43463 412 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 AKR1B10O60218 316 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 ITGA10O75578 1167 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 RFPL1O75677 317 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 IPO13O94829 963 aaKnown RBP3.17□□□□□ -1.9
PTPRC-208ENST00000427110 SCAF4O95104 1147 aaKnown RBP3.17□□□□□ -1.9
PTPRC-208ENST00000427110 ADH4P08319 380 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 LTA4HP09960 611 aaKnown RBP3.17□□□□□ -1.9
PTPRC-208ENST00000427110 GOLGA6DP0CG33 693 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 CYP2C19P33261 490 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 MCM7P33993 719 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 GZMKP49863 264 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 PER3P56645 1201 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 FAM189BP81408 668 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 MALLQ13021 153 aa3.17□□□□□ -1.9
PTPRC-208ENST00000427110 MRPL49Q13405 166 aaKnown RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms