RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 OLIG1Q8TAK6 271 aa11.77□□□□□ -0.52
DDX56-203ENST00000421223 MSTO1Q9BUK6 570 aa11.77□□□□□ -0.52
DDX56-203ENST00000421223 TIPINQ9BVW5 301 aa11.77□□□□□ -0.52
DDX56-203ENST00000421223 PTPN22Q9Y2R2 807 aa11.77□□□□□ -0.52
DDX56-203ENST00000421223 PSME4Q14997 1843 aa11.77□□□□□ -0.53
DDX56-203ENST00000421223 NOP56O00567 594 aaKnown RBP11.77□□□□□ -0.53
DDX56-203ENST00000421223 STBD1O95210 358 aa11.77□□□□□ -0.53
DDX56-203ENST00000421223 OATP04181 439 aa11.77□□□□□ -0.53
DDX56-203ENST00000421223 UBA1P22314 1058 aaKnown RBP11.77□□□□□ -0.53
DDX56-203ENST00000421223 ZNF394Q53GI3 561 aa11.77□□□□□ -0.53
DDX56-203ENST00000421223 DCAF12L1Q5VU92 463 aa11.77□□□□□ -0.53
DDX56-203ENST00000421223 ACTRT1Q8TDG2 376 aa11.77□□□□□ -0.53
DDX56-203ENST00000421223 HES6Q96HZ4 224 aa11.77□□□□□ -0.53
DDX56-203ENST00000421223 GDF3Q9NR23 364 aa11.77□□□□□ -0.53
DDX56-203ENST00000421223 INTUQ9ULD6 942 aa11.77□□□□□ -0.53
DDX56-203ENST00000421223 A0A0A6YYK5 440 aaPredicted RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 ANKRD65E5RJM6 399 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 RTN2O75298 545 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 ANXA13P27216 316 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 ALDH5A1P51649 535 aaPredicted RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 STAT5BP51692 787 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 OAZ1P54368 228 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 IGBP1P78318 339 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 BRDTQ58F21 947 aaPredicted RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 CEP85LQ5SZL2 805 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 C12orf56Q8IXR9 622 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 FAM71AQ8IYT1 594 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 RDM1Q8NG50 284 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 CCDC26Q8TAB7 109 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 HELQQ8TDG4 1101 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 SCFD2Q8WU76 684 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 TRAPPC12Q8WVT3 735 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 ZNF516Q92618 1163 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 C12orf42Q96LP6 360 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 TAF1DQ9H5J8 278 aaPredicted RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 ERVK-5Q9HDB9 667 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 NENFQ9UMX5 172 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 STXBP5LQ9Y2K9 1186 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 P4HA2O15460 535 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 ZEB2O60315 1214 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 CSDE1O75534 798 aaKnown RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 GJB1P08034 283 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 GLRA2P23416 452 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 HPDP32754 393 aaPredicted RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 TCF7P36402 384 aaPredicted RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 FLT3P36888 993 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 FMO1Q01740 532 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 EAPPQ56P03 285 aaPredicted RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 SCARA3Q6AZY7 606 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 FOXR1Q6PIV2 292 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 SLFN11Q7Z7L1 901 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 FMNL3Q8IVF7 1028 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 SAMD3Q8N6K7 520 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 SLC17A8Q8NDX2 589 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 UHMK1Q8TAS1 419 aaKnown RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 ZNF564Q8TBZ8 553 aaPredicted RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 CEP89Q96ST8 783 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 SYT11Q9BT88 431 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 TRIM7Q9C029 511 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 SPATC1LQ9H0A9 340 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 NEUROG2Q9H2A3 272 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 ST6GALNAC4Q9H4F1 302 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 AZI2Q9H6S1 392 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 RBAKQ9NYW8 714 aaPredicted RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 CNOT8Q9UFF9 292 aaKnown RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 RSPH14Q9UHP6 348 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 ADAMTS5Q9UNA0 930 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 ATAD5Q96QE3 1844 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 ZC3H4Q9UPT8 1303 aaKnown RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 TTLL13PA6NNM8 815 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 OPA1O60313 960 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 HLA-DRAP01903 254 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 PPATQ06203 517 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 TMEM63BQ5T3F8 832 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 TMEM270Q6UE05 265 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 RHOT2Q8IXI1 618 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 UBL4BQ8N7F7 174 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 SPIRE2Q8WWL2 714 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 COPS5Q92905 334 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 TRPC6Q9Y210 931 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 SNX24Q9Y343 169 aa11.76□□□□□ -0.53
DDX56-203ENST00000421223 UTP11Q9Y3A2 253 aaKnown RBP11.76□□□□□ -0.53
DDX56-203ENST00000421223 POLR2AP24928 1970 aaKnown RBP11.75□□□□□ -0.53
DDX56-203ENST00000421223 DOCK5Q9H7D0 1870 aa11.75□□□□□ -0.53
DDX56-203ENST00000421223 GOLGA6L10A0A0M3HER8 536 aa11.75□□□□□ -0.53
DDX56-203ENST00000421223 SOWAHBA6NEL2 793 aa11.75□□□□□ -0.53
DDX56-203ENST00000421223 DDX3YO15523 660 aaKnown RBP11.75□□□□□ -0.53
DDX56-203ENST00000421223 CD58P19256 250 aa11.75□□□□□ -0.53
DDX56-203ENST00000421223 RFX1P22670 979 aa11.75□□□□□ -0.53
DDX56-203ENST00000421223 KCNJ1P48048 391 aa11.75□□□□□ -0.53
DDX56-203ENST00000421223 AARSP49588 968 aaKnown RBP eCLIP11.75□□□□□ -0.53
DDX56-203ENST00000421223 SNX1Q13596 522 aa11.75□□□□□ -0.53
DDX56-203ENST00000421223 PRPF31Q8WWY3 499 aaKnown RBP11.75□□□□□ -0.53
DDX56-203ENST00000421223 SHC3Q92529 594 aa11.75□□□□□ -0.53
DDX56-203ENST00000421223 MAGOHBQ96A72 148 aaKnown RBP11.75□□□□□ -0.53
DDX56-203ENST00000421223 NTPCRQ9BSD7 190 aaKnown RBP11.75□□□□□ -0.53
DDX56-203ENST00000421223 NOCTQ9UK39 431 aaKnown RBP11.75□□□□□ -0.53
DDX56-203ENST00000421223 PLAAQ9Y263 795 aa11.75□□□□□ -0.53
DDX56-203ENST00000421223 USTQ9Y2C2 406 aa11.75□□□□□ -0.53
DDX56-203ENST00000421223 PCDHB4Q9Y5E5 795 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms