RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PADI6Q6TGC4 694 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 H2AFVQ71UI9 128 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 FAM126BQ8IXS8 530 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 RDM1Q8NG50 284 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 CALR3Q96L12 384 aaKnown RBP16.03■□□□□ 0.16
USP4-203ENST00000415188 ACCSQ96QU6 501 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 IWS1Q96ST2 819 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 SUGCTQ9HAC7 445 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 KCNH7Q9NS40 1196 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 RNF216Q9NWF9 866 aaPredicted RBP16.03■□□□□ 0.16
USP4-203ENST00000415188 WRAP73Q9P2S5 460 aaPredicted RBP16.03■□□□□ 0.16
USP4-203ENST00000415188 GRIN2DO15399 1336 aa16.02■□□□□ 0.16
USP4-203ENST00000415188 MROH7Q68CQ1 1323 aa16.02■□□□□ 0.16
USP4-203ENST00000415188 SFI1A8K8P3 1242 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 DHX15O43143 795 aaKnown RBP16.02■□□□□ 0.15
USP4-203ENST00000415188 NCK2O43639 380 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 TIMP1P01033 207 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 KRT13P13646 458 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 QARSP47897 775 aaKnown RBP16.02■□□□□ 0.15
USP4-203ENST00000415188 RPS6KA1Q15418 735 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 DUSP28Q4G0W2 176 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 ZC2HC1CQ53FD0 456 aaPredicted RBP16.02■□□□□ 0.15
USP4-203ENST00000415188 C8orf74Q6P047 294 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 INTS8Q75QN2 995 aaKnown RBP16.02■□□□□ 0.15
USP4-203ENST00000415188 SYCP3Q8IZU3 236 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 SYCE1Q8N0S2 351 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 SYTL5Q8TDW5 730 aaPredicted RBP16.02■□□□□ 0.15
USP4-203ENST00000415188 INPP4AQ96PE3 977 aaPredicted RBP16.02■□□□□ 0.15
USP4-203ENST00000415188 SELENOOQ9BVL4 669 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 MAF1Q9H063 256 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 ADAM21Q9UKJ8 722 aa16.02■□□□□ 0.15
USP4-203ENST00000415188 NCANO14594 1321 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 PMM2O15305 246 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 SFNP31947 248 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 MCCD1P59942 119 aaPredicted RBP16.01■□□□□ 0.15
USP4-203ENST00000415188 TNNC1P63316 161 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 MYL7Q01449 175 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 CETN1Q12798 172 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 BFSP1Q12934 665 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 FAM109BQ6ICB4 259 aaPredicted RBP16.01■□□□□ 0.15
USP4-203ENST00000415188 GPIHBP1Q8IV16 184 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 IFT20Q8IY31 132 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 C4orf19Q8IY42 314 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 DAW1Q8N136 415 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 SLC43A3Q8NBI5 491 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 BANK1Q8NDB2 785 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.01■□□□□ 0.15
USP4-203ENST00000415188 CAVIN3Q969G5 261 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 HVCN1Q96D96 273 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 RNPC3Q96LT9 517 aaKnown RBP16.01■□□□□ 0.15
USP4-203ENST00000415188 GUCD1Q96NT3 240 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 LRRC1Q9BTT6 524 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 PACSIN1Q9BY11 444 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 PPP1R12CQ9BZL4 782 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 INTS2Q9H0H0 1204 aaKnown RBP16.01■□□□□ 0.15
USP4-203ENST00000415188 COL20A1Q9P218 1284 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 VPS18Q9P253 973 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 TCEAL9Q9UHQ7 104 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 Q9Y3F1 56 aa16.01■□□□□ 0.15
USP4-203ENST00000415188 LOC102724159A0A0B4J2E5 919 aa16■□□□□ 0.15
USP4-203ENST00000415188 F8VZ95 297 aa16■□□□□ 0.15
USP4-203ENST00000415188 K7ENM7 598 aa16■□□□□ 0.15
USP4-203ENST00000415188 ZBTB39O15060 712 aa16■□□□□ 0.15
USP4-203ENST00000415188 ZEB2O60315 1214 aa16■□□□□ 0.15
USP4-203ENST00000415188 EXOC3O60645 756 aa16■□□□□ 0.15
USP4-203ENST00000415188 CABYRO75952 493 aa16■□□□□ 0.15
USP4-203ENST00000415188 KIF4AO95239 1232 aa16■□□□□ 0.15
USP4-203ENST00000415188 FTCDO95954 541 aa16■□□□□ 0.15
USP4-203ENST00000415188 CD4P01730 458 aa16■□□□□ 0.15
USP4-203ENST00000415188 PLS3P13797 630 aa16■□□□□ 0.15
USP4-203ENST00000415188 EDNRBP24530 442 aa16■□□□□ 0.15
USP4-203ENST00000415188 CYP2J2P51589 502 aa16■□□□□ 0.15
USP4-203ENST00000415188 KRT76Q01546 638 aa16■□□□□ 0.15
USP4-203ENST00000415188 MTMR1Q13613 665 aa16■□□□□ 0.15
USP4-203ENST00000415188 ITGA7Q13683 1181 aa16■□□□□ 0.15
USP4-203ENST00000415188 PWP2Q15269 919 aaKnown RBP16■□□□□ 0.15
USP4-203ENST00000415188 GOLGA6L1Q8N7Z2 621 aa16■□□□□ 0.15
USP4-203ENST00000415188 LRRC57Q8N9N7 239 aa16■□□□□ 0.15
USP4-203ENST00000415188 EIF1ADQ8N9N8 165 aaKnown RBP16■□□□□ 0.15
USP4-203ENST00000415188 RBM12Q9NTZ6 932 aaKnown RBP16■□□□□ 0.15
USP4-203ENST00000415188 ANKEF1Q9NU02 776 aa16■□□□□ 0.15
USP4-203ENST00000415188 CALCOCO1Q9P1Z2 691 aa16■□□□□ 0.15
USP4-203ENST00000415188 USP20Q9Y2K6 914 aa16■□□□□ 0.15
USP4-203ENST00000415188 STXBP5LQ9Y2K9 1186 aa16■□□□□ 0.15
USP4-203ENST00000415188 RBM47A0AV96 593 aaKnown RBP15.99■□□□□ 0.15
USP4-203ENST00000415188 TLR3O15455 904 aaKnown RBP15.99■□□□□ 0.15
USP4-203ENST00000415188 CXCR5P32302 372 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 RARRES1P49788 294 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 ITGB3BPQ13352 177 aaPredicted RBP15.99■□□□□ 0.15
USP4-203ENST00000415188 ENOX2Q16206 610 aaKnown RBP15.99■□□□□ 0.15
USP4-203ENST00000415188 ZNF697Q5TEC3 545 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 MFSD5Q6N075 450 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 SLFN11Q7Z7L1 901 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 TPCN2Q8NHX9 752 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 IL31RAQ8NI17 732 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 SLC30A5Q8TAD4 765 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 COPS5Q92905 334 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 CCDC43Q96MW1 224 aaKnown RBP15.99■□□□□ 0.15
USP4-203ENST00000415188 TRPV6Q9H1D0 765 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 BCAS3Q9H6U6 928 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms