RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 CXCL17Q6UXB2 119 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 C1orf186Q6ZWK4 172 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 HDXQ7Z353 690 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 PRRT2Q7Z6L0 340 aaPredicted RBP9.73□□□□□ -0.85
LIG4-202ENST00000405925 ANKRD23Q86SG2 305 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 RFX6Q8HWS3 928 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 RNF139Q8WU17 664 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 PGBD4Q96DM1 585 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 EIF3CQ99613 913 aaKnown RBP9.73□□□□□ -0.85
LIG4-202ENST00000405925 PRPSAP2O60256 369 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 IL18RAPO95256 599 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 GARTP22102 1010 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 FGFR4P22455 802 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 ADCY8P40145 1251 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 FLT3LGP49771 235 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 GUCY2FP51841 1108 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 MPZL3Q6UWV2 235 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 SRGAP1Q7Z6B7 1085 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 C4orf32Q8N8J7 132 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 RBBP8NLQ8NC74 664 aaPredicted RBP9.72□□□□□ -0.85
LIG4-202ENST00000405925 CLEC4DQ8WXI8 215 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 NID2Q14112 1375 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 PHF20L1A8MW92 1017 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 ADCY3O60266 1144 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 PSMC1P62191 440 aaKnown RBP9.72□□□□□ -0.85
LIG4-202ENST00000405925 MFSD10Q14728 455 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 SGO2Q562F6 1265 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 NT5DC1Q5TFE4 455 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 NFRKBQ6P4R8 1299 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 TTC39CQ8N584 583 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 PPP1R14CQ8TAE6 165 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 CPB2Q96IY4 423 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 POP1Q99575 1024 aaKnown RBP9.72□□□□□ -0.85
LIG4-202ENST00000405925 AGPAT1Q99943 283 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 MTG1Q9BT17 334 aaPredicted RBP9.72□□□□□ -0.85
LIG4-202ENST00000405925 MTMR12Q9C0I1 747 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 POLIQ9UNA4 740 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 PTPN22Q9Y2R2 807 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 EFCAB8A8MWE9 144 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 ADAMTS3O15072 1205 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 ITGB3P05106 788 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 PDGFRBP09619 1106 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 SPATA31C1P0DKV0 1188 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 SCP2P22307 547 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 CASP5P51878 434 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 SNX1Q13596 522 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 PLCB4Q15147 1175 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 HSDL1Q3SXM5 330 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 KLHDC7AQ5VTJ3 777 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 CDKAL1Q5VV42 579 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 CCDC91Q7Z6B0 441 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 CAPNS2Q96L46 248 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 IRX2Q9BZI1 471 aaPredicted RBP9.72□□□□□ -0.85
LIG4-202ENST00000405925 HMX1Q9NP08 348 aaPredicted RBP9.72□□□□□ -0.85
LIG4-202ENST00000405925 PRG3Q9Y2Y8 225 aaPredicted RBP9.72□□□□□ -0.85
LIG4-202ENST00000405925 XIRP1Q702N8 1843 aaKnown RBP9.72□□□□□ -0.85
LIG4-202ENST00000405925 TOGARAM1Q9Y4F4 1720 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 CALB1P05937 261 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 PSEN2P49810 448 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 GUCY2DQ02846 1103 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 CCDC14Q49A88 953 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 TRIM65Q6PJ69 517 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 PDZD4Q76G19 769 aaPredicted RBP9.72□□□□□ -0.85
LIG4-202ENST00000405925 SLC30A5Q8TAD4 765 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 BRI3BPQ8WY22 251 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 MTMR8Q96EF0 704 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 APBA2Q99767 749 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 SELENOSQ9BQE4 189 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 RNF208Q9H0X6 261 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 ZWILCHQ9H900 591 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 IFT122Q9HBG6 1241 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 SEPT10Q9P0V9 454 aa9.72□□□□□ -0.85
LIG4-202ENST00000405925 PDE4DIPQ5VU43 2346 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 MYH2Q9UKX2 1941 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 ZC3H4Q9UPT8 1303 aaKnown RBP9.71□□□□□ -0.85
LIG4-202ENST00000405925 CPB1P15086 417 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 PPM1FP49593 454 aaPredicted RBP9.71□□□□□ -0.85
LIG4-202ENST00000405925 CCZ1BP86790 482 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 CCZ1P86791 482 aaPredicted RBP9.71□□□□□ -0.85
LIG4-202ENST00000405925 UGCGQ16739 394 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 EPC2Q52LR7 807 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 PPP6R3Q5H9R7 873 aaPredicted RBP9.71□□□□□ -0.85
LIG4-202ENST00000405925 RAD9BQ6WBX8 426 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 ZNF564Q8TBZ8 553 aaPredicted RBP9.71□□□□□ -0.85
LIG4-202ENST00000405925 ZNF507Q8TCN5 953 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 SPIRE2Q8WWL2 714 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 TNIP3Q96KP6 325 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 NUP85Q9BW27 656 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 NIF3L1Q9GZT8 377 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 KCNF1Q9H3M0 494 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 VAV3Q9UKW4 847 aa9.71□□□□□ -0.85
LIG4-202ENST00000405925 BAZ2AQ9UIF9 1905 aaKnown RBP9.71□□□□□ -0.85
LIG4-202ENST00000405925 TISP43B9A030 160 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 KPNA6O60684 536 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 ZMYND10O75800 440 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 CCNE2O96020 404 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 EZRP15311 586 aaKnown RBP9.71□□□□□ -0.86
LIG4-202ENST00000405925 ARL4AP40617 200 aa9.71□□□□□ -0.86
LIG4-202ENST00000405925 IRX5P78411 483 aaPredicted RBP9.71□□□□□ -0.86
LIG4-202ENST00000405925 MDM2Q00987 491 aaPredicted RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms