RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ADAMTS10Q9H324 1103 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 EPHX3Q9H6B9 360 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 RC3H2Q9HBD1 1191 aaKnown RBP10.14□□□□□ -0.79
VPS53-203ENST00000401468 ERVK-5Q9HDB9 667 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 AAASQ9NRG9 546 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 CLDND1Q9NY35 253 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 AKT3Q9Y243 479 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 PDCD11Q14690 1871 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 WDFY4Q6ZS81 3184 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 PVALEFA0A1B0GWK0 134 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 TTC24A2A3L6 582 aaPredicted RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 TBKBP1A7MCY6 615 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 H3BNC9 293 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 RPS6KA5O75582 802 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 DGKIO75912 1065 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 MAPTP10636 758 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 SCP2P22307 547 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 GLRA2P23416 452 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 TMOD1P28289 359 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 SARSP49591 514 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 DNM2P50570 870 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 GPC3P51654 580 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 NLRP11P59045 1033 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 SPOUT1Q5T280 376 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 CDCA2Q69YH5 1023 aaPredicted RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 RBM43Q6ZSC3 357 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 FAM43BQ6ZT52 329 aaPredicted RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 RBM23Q86U06 439 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 ZNF410Q86VK4 478 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 FAM228AQ86W67 206 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 KSR1Q8IVT5 923 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 ASAP3Q8TDY4 903 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 SPIRE2Q8WWL2 714 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 PRPF31Q8WWY3 499 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 PSPC1Q8WXF1 523 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 MRPL38Q96DV4 380 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 CCDC43Q96MW1 224 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 SCLT1Q96NL6 688 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 STRA6Q9BX79 667 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 ST6GALNAC4Q9H4F1 302 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 IFT122Q9HBG6 1241 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 OLFML3Q9NRN5 406 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 SEL1LQ9UBV2 794 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 KCNG1Q9UIX4 513 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 LRFN2Q9ULH4 789 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 ST3GAL5Q9UNP4 418 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 SQORQ9Y6N5 450 aa10.13□□□□□ -0.79
VPS53-203ENST00000401468 MTCL1Q9Y4B5 1905 aaKnown RBP10.13□□□□□ -0.79
VPS53-203ENST00000401468 NPHP3-ACAD11A0A0J9YXS1 232 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 DENND3A2RUS2 1198 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 KINO60870 393 aaKnown RBP10.12□□□□□ -0.79
VPS53-203ENST00000401468 ITGB1P05556 798 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 PLS3P13797 630 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 BMPR1AP36894 532 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 NAMPTP43490 491 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 MRE11P49959 708 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 NCKAP1LP55160 1127 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 LAMTOR4Q0VGL1 99 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 CUL4BQ13620 913 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 CAPSQ13938 189 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 CAMK1Q14012 370 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 POSTNQ15063 836 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 PCBP1Q15365 356 aaKnown RBP eCLIP10.12□□□□□ -0.79
VPS53-203ENST00000401468 KLHL40Q2TBA0 621 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 UNC13DQ70J99 1090 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 GRAMD1CQ8IYS0 662 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 KLHL23Q8NBE8 558 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 BSNDQ8WZ55 320 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 TMEM143Q96AN5 459 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 ZNF775Q96BV0 537 aaPredicted RBP10.12□□□□□ -0.79
VPS53-203ENST00000401468 ZNF689Q96CS4 500 aaPredicted RBP10.12□□□□□ -0.79
VPS53-203ENST00000401468 CCDC34Q96HJ3 373 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 REPIN1Q9BWE0 567 aaKnown RBP10.12□□□□□ -0.79
VPS53-203ENST00000401468 CCDC113Q9H0I3 377 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 POLR3FQ9H1D9 316 aaPredicted RBP10.12□□□□□ -0.79
VPS53-203ENST00000401468 CLSTN2Q9H4D0 955 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 PARVGQ9HBI0 331 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 GPRC5CQ9NQ84 441 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 LARSQ9P2J5 1176 aaKnown RBP10.12□□□□□ -0.79
VPS53-203ENST00000401468 ARHGAP28Q9P2N2 729 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 SUCLA2Q9P2R7 463 aaPredicted RBP10.12□□□□□ -0.79
VPS53-203ENST00000401468 COL4A3BPQ9Y5P4 624 aa10.12□□□□□ -0.79
VPS53-203ENST00000401468 CITO14578 2027 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 PER2O15055 1255 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 RHOBTB3O94955 611 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 SSBP05455 408 aaKnown RBP eCLIP10.11□□□□□ -0.79
VPS53-203ENST00000401468 GAP43P17677 238 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 SSTR3P32745 418 aaPredicted RBP10.11□□□□□ -0.79
VPS53-203ENST00000401468 AFMP43652 599 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 NPTX2P47972 431 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 CRYBB1P53674 252 aaPredicted RBP10.11□□□□□ -0.79
VPS53-203ENST00000401468 PTENP60484 403 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 HYAL1Q12794 435 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 KCNB1Q14721 858 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 PPP2R5AQ15172 486 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 FAM187BQ17R55 369 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 PTCRAQ6ISU1 281 aaPredicted RBP10.11□□□□□ -0.79
VPS53-203ENST00000401468 STAMQ92783 540 aa10.11□□□□□ -0.79
VPS53-203ENST00000401468 LPPQ93052 612 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms