RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CDHR5Q9HBB8 845 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 ATP11BQ9Y2G3 1177 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 SQORQ9Y6N5 450 aa15.46■□□□□ 0.07
SKA1-202ENST00000398452 RANBP2P49792 3224 aaKnown RBP15.45■□□□□ 0.06
SKA1-202ENST00000398452 A0A0B4J269 797 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 N4BP1O75113 896 aaKnown RBP15.45■□□□□ 0.06
SKA1-202ENST00000398452 PARNO95453 639 aaKnown RBP15.45■□□□□ 0.06
SKA1-202ENST00000398452 COL6A1P12109 1028 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 CKBP12277 381 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 SELPP16109 830 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 FGFR4P22455 802 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 ADSSP30520 456 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 CASP4P49662 377 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 ZNF75DP51815 510 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 YARSP54577 528 aaKnown RBP15.45■□□□□ 0.06
SKA1-202ENST00000398452 UBXN1Q04323 297 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 VWA3BQ502W6 1294 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 FAM26DQ5JW98 314 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 ZNF618Q5T7W0 954 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 TWF2Q6IBS0 349 aaKnown RBP15.45■□□□□ 0.06
SKA1-202ENST00000398452 SLC39A4Q6P5W5 647 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 SLC27A1Q6PCB7 646 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 THNSL1Q8IYQ7 743 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 MRFAP1L1Q96HT8 127 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 ZBTB45Q96K62 511 aaPredicted RBP15.45■□□□□ 0.06
SKA1-202ENST00000398452 CCDC94Q9BW85 323 aaPredicted RBP15.45■□□□□ 0.06
SKA1-202ENST00000398452 XPO4Q9C0E2 1151 aaKnown RBP15.45■□□□□ 0.06
SKA1-202ENST00000398452 HSD3B7Q9H2F3 369 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 RPF1Q9H9Y2 349 aaKnown RBP15.45■□□□□ 0.06
SKA1-202ENST00000398452 CHST12Q9NRB3 414 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 AGPAT5Q9NUQ2 364 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 USP20Q9Y2K6 914 aa15.45■□□□□ 0.06
SKA1-202ENST00000398452 NOC2LQ9Y3T9 749 aaKnown RBP15.45■□□□□ 0.06
SKA1-202ENST00000398452 A0A1B0GUA9 196 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 LRRC10BA6NIK2 292 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 CHRNA1P02708 482 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 AFPP02771 609 aaKnown RBP15.44■□□□□ 0.06
SKA1-202ENST00000398452 TPM1P09493 284 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 IQCF3P0C7M6 154 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 GHRP10912 638 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 VAMP7P51809 220 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 TLE2Q04725 743 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 MGAT3Q09327 533 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 BFSP1Q12934 665 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 AMHR2Q16671 573 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 TRIM60Q495X7 471 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 FBXO47Q5MNV8 452 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 LRRC8DQ7L1W4 858 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 ANKRD33Q7Z3H0 272 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.44■□□□□ 0.06
SKA1-202ENST00000398452 FAM228AQ86W67 206 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 IRF2BP1Q8IU81 584 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 DHX38Q92620 1227 aaKnown RBP15.44■□□□□ 0.06
SKA1-202ENST00000398452 WNT8BQ93098 351 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 GDF15Q99988 308 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 UBE2OQ9C0C9 1292 aaKnown RBP15.44■□□□□ 0.06
SKA1-202ENST00000398452 CDT1Q9H211 546 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 NDST4Q9H3R1 872 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 PDZD7Q9H5P4 517 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 RBAKQ9NYW8 714 aaPredicted RBP15.44■□□□□ 0.06
SKA1-202ENST00000398452 ST3GAL5Q9UNP4 418 aa15.44■□□□□ 0.06
SKA1-202ENST00000398452 TRIP12Q14669 1992 aaPredicted RBP15.44■□□□□ 0.06
SKA1-202ENST00000398452 A0A1B0GTH6 734 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 NPTXRO95502 500 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 CD4P01730 458 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 PTMAP06454 111 aaKnown RBP15.43■□□□□ 0.06
SKA1-202ENST00000398452 CLTAP09496 248 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 PROZP22891 400 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 ACOT2P49753 483 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 ENPEPQ07075 957 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 RBL2Q08999 1139 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 CCDC173Q0VFZ6 552 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 TRIM71Q2Q1W2 868 aaKnown RBP15.43■□□□□ 0.06
SKA1-202ENST00000398452 FAM43BQ6ZT52 329 aaPredicted RBP15.43■□□□□ 0.06
SKA1-202ENST00000398452 CDR2LQ86X02 465 aaPredicted RBP15.43■□□□□ 0.06
SKA1-202ENST00000398452 CBWD2Q8IUF1 395 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 TRIM59Q8IWR1 403 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 TMEM40Q8WWA1 233 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 CCDC127Q96BQ5 260 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 FBXL18Q96ME1 805 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 HIPK3Q9H422 1215 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 RTN4Q9NQC3 1192 aaKnown RBP15.43■□□□□ 0.06
SKA1-202ENST00000398452 TMEM39AQ9NV64 488 aa15.43■□□□□ 0.06
SKA1-202ENST00000398452 R3HCC1Q9Y3T6 440 aaKnown RBP15.43■□□□□ 0.06
SKA1-202ENST00000398452 LGALS16A8MUM7 142 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 CLSTN1O94985 981 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 IL18RAPO95256 599 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 EDN1P05305 212 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 CLTBP09497 229 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 DLATP10515 647 aaKnown RBP15.42■□□□□ 0.06
SKA1-202ENST00000398452 SKIP12755 728 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 TNNI1P19237 187 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 CDC25BP30305 580 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 RAB27AP51159 221 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 OSTNP61366 133 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 POU5F1Q01860 360 aaKnown RBP15.42■□□□□ 0.06
SKA1-202ENST00000398452 CYP24A1Q07973 514 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 KCNH2Q12809 1159 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 EEF1DP3Q658K8 133 aa15.42■□□□□ 0.06
SKA1-202ENST00000398452 TMC2Q8TDI7 906 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms