RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SHC3Q92529 594 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 GJD4Q96KN9 370 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-205ENST00000395684 MXRA8Q9BRK3 442 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 ROPN1BQ9BZX4 212 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-205ENST00000395684 STMN4Q9H169 189 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-205ENST00000395684 ROPN1Q9HAT0 212 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-205ENST00000395684 GGT7Q9UJ14 662 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 GTF3C4Q9UKN8 822 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-205ENST00000395684 TMX2Q9Y320 296 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 CD2APQ9Y5K6 639 aa13.62□□□□□ -0.23
SHMT1-205ENST00000395684 TMEM150BA6NC51 233 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 ATP6V1G2O95670 118 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 PLS3P13797 630 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 RARRES1P49788 294 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 TRAF1Q13077 416 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 CALCOCO2Q13137 446 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 SNX1Q13596 522 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 GRIPAP1Q4V328 841 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 TRMT10CQ7L0Y3 403 aaKnown RBP13.61□□□□□ -0.23
SHMT1-205ENST00000395684 MIER3Q7Z3K6 550 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 HAUS6Q7Z4H7 955 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 CBWD2Q8IUF1 395 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 ARHGEF2Q92974 986 aaKnown RBP13.61□□□□□ -0.23
SHMT1-205ENST00000395684 RIT2Q99578 217 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 TMX4Q9H1E5 349 aaPredicted RBP13.61□□□□□ -0.23
SHMT1-205ENST00000395684 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.61□□□□□ -0.23
SHMT1-205ENST00000395684 KCNH7Q9NS40 1196 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.61□□□□□ -0.23
SHMT1-205ENST00000395684 USP20Q9Y2K6 914 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 MRPL11Q9Y3B7 192 aaKnown RBP13.61□□□□□ -0.23
SHMT1-205ENST00000395684 FSCN2O14926 492 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 DHX15O43143 795 aaKnown RBP13.61□□□□□ -0.23
SHMT1-205ENST00000395684 GRIN3BO60391 1043 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 ENTPD3O75355 529 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 MAPTP10636 758 aaKnown RBP13.61□□□□□ -0.23
SHMT1-205ENST00000395684 FKBP1AP62942 108 aaKnown RBP13.61□□□□□ -0.23
SHMT1-205ENST00000395684 GTF2BQ00403 316 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 KRT17Q04695 432 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 NBPF9Q3BBW0 867 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 RHBDF2Q6PJF5 856 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 VSTM1Q6UX27 236 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 RPAINQ86UA6 219 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 TEX2Q8IWB9 1127 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 CCDC63Q8NA47 563 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 HELQQ8TDG4 1101 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 NOD2Q9HC29 1040 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 ARHGEF10LQ9HCE6 1279 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 GPRC5CQ9NQ84 441 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 CHST7Q9NS84 486 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 CTNNAL1Q9UBT7 734 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 SCN9AQ15858 1988 aa13.61□□□□□ -0.23
SHMT1-205ENST00000395684 AFF2P51816 1311 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 TMEM120BA0PK00 339 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 PMM2O15305 246 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 OAS1P00973 400 aaKnown RBP13.6□□□□□ -0.23
SHMT1-205ENST00000395684 CALCAP01258 141 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 P4HBP07237 508 aaKnown RBP13.6□□□□□ -0.23
SHMT1-205ENST00000395684 IVDP26440 423 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 ADSSP30520 456 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 PDE6CP51160 858 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 SLC27A3Q5K4L6 730 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 TRMT1LQ7Z2T5 733 aaKnown RBP13.6□□□□□ -0.23
SHMT1-205ENST00000395684 TBC1D1Q86TI0 1168 aaPredicted RBP13.6□□□□□ -0.23
SHMT1-205ENST00000395684 TCP11Q8WWU5 503 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 DDX1Q92499 740 aaKnown RBP13.6□□□□□ -0.23
SHMT1-205ENST00000395684 SLCO2A1Q92959 643 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 CCDC127Q96BQ5 260 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 HERPUD2Q9BSE4 406 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 EHMT1Q9H9B1 1298 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 MLXIPLQ9NP71 852 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 FBXO28Q9NVF7 368 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 FGFR1OP2Q9NVK5 253 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 UVRAGQ9P2Y5 699 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 BAIAP2L1Q9UHR4 511 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 ZBTB21Q9ULJ3 1066 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 SYNPO2Q9UMS6 1093 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 TCP11X1B4DZS4 312 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 SLC16A4O15374 487 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 MFAP3P55082 362 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 CDR2Q01850 454 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 ALCAMQ13740 583 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 ZYXQ15942 572 aaKnown RBP13.6□□□□□ -0.23
SHMT1-205ENST00000395684 SGO2Q562F6 1265 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 LDHDQ86WU2 507 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 ATG4AQ8WYN0 398 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 DHX38Q92620 1227 aaKnown RBP13.6□□□□□ -0.23
SHMT1-205ENST00000395684 ZNF622Q969S3 477 aaKnown RBP eCLIP13.6□□□□□ -0.23
SHMT1-205ENST00000395684 TRIM7Q9C029 511 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 HOMER3Q9NSC5 361 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 DNAJC17Q9NVM6 304 aaKnown RBP13.6□□□□□ -0.23
SHMT1-205ENST00000395684 WHRNQ9P202 907 aa13.6□□□□□ -0.23
SHMT1-205ENST00000395684 MAPK13O15264 365 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 C21orf2O43822 256 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 UBOX5O94941 541 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 CLTAP09496 248 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 PEX3P56589 373 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 SPP2Q13103 211 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 MPP2Q14168 576 aa13.59□□□□□ -0.23
SHMT1-205ENST00000395684 TRIP13Q15645 432 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms