RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CCDC65Q8IXS2 484 aa14.64□□□□□ -0.07
VPS28-202ENST00000377348 GLIS3Q8NEA6 775 aa14.64□□□□□ -0.07
VPS28-202ENST00000377348 SPPL3Q8TCT6 385 aa14.64□□□□□ -0.07
VPS28-202ENST00000377348 P2RX5Q93086 422 aa14.64□□□□□ -0.07
VPS28-202ENST00000377348 STRA6Q9BX79 667 aa14.64□□□□□ -0.07
VPS28-202ENST00000377348 ST6GALNAC4Q9H4F1 302 aa14.64□□□□□ -0.07
VPS28-202ENST00000377348 OLFML3Q9NRN5 406 aa14.64□□□□□ -0.07
VPS28-202ENST00000377348 XIRP2A4UGR9 3374 aa14.64□□□□□ -0.07
VPS28-202ENST00000377348 GOLGA6L4A6NEF3 574 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 ANKRD63C9JTQ0 380 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 PTGESO14684 152 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 PIGRP01833 764 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 POU3F3P20264 500 aaPredicted RBP14.63□□□□□ -0.07
VPS28-202ENST00000377348 GRM5P41594 1212 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 SLC11A1P49279 550 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 MCL1Q07820 350 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 CAMK1Q14012 370 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 NOLC1Q14978 699 aaKnown RBP eCLIP14.63□□□□□ -0.07
VPS28-202ENST00000377348 CNNM4Q6P4Q7 775 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 SLC39A11Q8N1S5 342 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 SLC17A8Q8NDX2 589 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 BCL7CQ8WUZ0 217 aaPredicted RBP14.63□□□□□ -0.07
VPS28-202ENST00000377348 POF1BQ8WVV4 589 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 RSPH1Q8WYR4 309 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 MRPL38Q96DV4 380 aaKnown RBP14.63□□□□□ -0.07
VPS28-202ENST00000377348 RPS6KC1Q96S38 1066 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 KANSL3Q9P2N6 904 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 PCDHGC5Q9Y5F6 944 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 MYO7AQ13402 2215 aa14.63□□□□□ -0.07
VPS28-202ENST00000377348 CLDN3O15551 220 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 MEFVO15553 781 aaPredicted RBP14.62□□□□□ -0.07
VPS28-202ENST00000377348 PRPF6O94906 941 aaKnown RBP14.62□□□□□ -0.07
VPS28-202ENST00000377348 ZNF202O95125 648 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 GALTP07902 379 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 PRR29P0C7W0 189 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 SCP2P22307 547 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 IRS1P35568 1242 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 ALDH7A1P49419 539 aaKnown RBP14.62□□□□□ -0.07
VPS28-202ENST00000377348 GLRA4Q5JXX5 417 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 L1TD1Q5T7N2 865 aaKnown RBP14.62□□□□□ -0.07
VPS28-202ENST00000377348 KRBA2Q6ZNG9 492 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 UNC13DQ70J99 1090 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 APBB1IPQ7Z5R6 666 aaPredicted RBP14.62□□□□□ -0.07
VPS28-202ENST00000377348 COLGALT2Q8IYK4 626 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 FAM193BQ96PV7 902 aaPredicted RBP14.62□□□□□ -0.07
VPS28-202ENST00000377348 CCDC94Q9BW85 323 aaPredicted RBP14.62□□□□□ -0.07
VPS28-202ENST00000377348 SPG21Q9NZD8 308 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 CACNG4Q9UBN1 327 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 USP25Q9UHP3 1055 aa14.62□□□□□ -0.07
VPS28-202ENST00000377348 UNC80Q8N2C7 3258 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 PLXNA4Q9HCM2 1894 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 F8W810 466 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 KLRC4O43908 158 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 GADD45BO75293 160 aaPredicted RBP14.61□□□□□ -0.07
VPS28-202ENST00000377348 ABCD1P33897 745 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 PPM1AP35813 382 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 TNFSF9P41273 254 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 OR1G1P47890 313 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 EHHADHQ08426 723 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 DSC1Q08554 894 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 GRIK3Q13003 919 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 PTPROQ16827 1216 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 CSPP1Q1MSJ5 1256 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 FAM26FQ5R3K3 315 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 ZBTB41Q5SVQ8 909 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 RABGGTAQ92696 567 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 ACAP3Q96P50 834 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 ACCSQ96QU6 501 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 LMAN2LQ9H0V9 348 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 PRDM6Q9NQX0 595 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 LMCD1Q9NZU5 365 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 PRG3Q9Y2Y8 225 aaPredicted RBP14.61□□□□□ -0.07
VPS28-202ENST00000377348 PCDHB13Q9Y5F0 798 aa14.61□□□□□ -0.07
VPS28-202ENST00000377348 ZMYM2Q9UBW7 1377 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 CASTOR2A6NHX0 329 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 NRP1O14786 923 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 YARSP54577 528 aaKnown RBP14.6□□□□□ -0.07
VPS28-202ENST00000377348 ERVFC1P60507 584 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 PLCB3Q01970 1234 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 SNW1Q13573 536 aaKnown RBP14.6□□□□□ -0.07
VPS28-202ENST00000377348 NAB2Q15742 525 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 FMR1NBQ8N0W7 255 aaPredicted RBP14.6□□□□□ -0.07
VPS28-202ENST00000377348 ENGASEQ8NFI3 743 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 HVCN1Q96D96 273 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 TMEM169Q96HH4 297 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 IGSF21Q96ID5 467 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 SNX27Q96L92 541 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 IPO9Q96P70 1041 aaKnown RBP14.6□□□□□ -0.07
VPS28-202ENST00000377348 PAAF1Q9BRP4 392 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 TMEM175Q9BSA9 504 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 MSTO1Q9BUK6 570 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 SLC39A2Q9NP94 309 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 MARCH5Q9NX47 278 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 FAN1Q9Y2M0 1017 aa14.6□□□□□ -0.07
VPS28-202ENST00000377348 A0A0B4J269 797 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 SMIM28A0A1B0GU29 152 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 PVALEFA0A1B0GWK0 134 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 OGTO15294 1046 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 FAM189A1O60320 539 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 ALDH2P05091 517 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms