RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 RAP2BP61225 183 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 STAT4Q14765 748 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 MST1LQ2TV78 715 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 C19orf54Q5BKX5 351 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 TOR2AQ5JU69 321 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 METRNLQ641Q3 311 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 NOP9Q86U38 636 aaKnown RBP3.12□□□□□ -1.91
VPS13A-206ENST00000376646 DNAJC10Q8IXB1 793 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 CMTR2Q8IYT2 770 aaKnown RBP3.12□□□□□ -1.91
VPS13A-206ENST00000376646 TRMT2AQ8IZ69 625 aaKnown RBP3.12□□□□□ -1.91
VPS13A-206ENST00000376646 ZNF480Q8WV37 535 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 LMBR1Q8WVP7 490 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 SLC2A13Q96QE2 648 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 SLC46A2Q9BY10 475 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 C14orf119Q9NWQ9 140 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 RPTORQ8N122 1335 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 TLDC2A0PJX2 215 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 CXorf49A8MYA2 514 aaPredicted RBP3.11□□□□□ -1.91
VPS13A-206ENST00000376646 ZEB2O60315 1214 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 OSMP13725 252 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 ZEB1P37275 1124 aaPredicted RBP3.11□□□□□ -1.91
VPS13A-206ENST00000376646 PLA2G5P39877 138 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 MASP1P48740 699 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 BMT2Q1RMZ1 405 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 BEAN1Q3B7T3 259 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 FAM102AQ5T9C2 384 aaPredicted RBP3.11□□□□□ -1.91
VPS13A-206ENST00000376646 IQSEC1Q6DN90 963 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 EFCAB12Q6NXP0 572 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 Q6YL49 198 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 AFAP1L2Q8N4X5 818 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 CPEB3Q8NE35 698 aaKnown RBP3.11□□□□□ -1.91
VPS13A-206ENST00000376646 RSAD2Q8WXG1 361 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 MYEOVQ96EZ4 313 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 ADAM2Q99965 735 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 SERHL2Q9H4I8 314 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 COL4A3Q01955 1670 aa3.11□□□□□ -1.91
VPS13A-206ENST00000376646 CCDC78A2IDD5 438 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 DRGXA6NNA5 263 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 B5MCH6 92 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 ULK1O75385 1050 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 FPR1P21462 350 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 KRTAP10-9P60411 292 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 MEF2AQ02078 507 aaPredicted RBP3.1□□□□□ -1.91
VPS13A-206ENST00000376646 PPP3CAQ08209 521 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 TP53BP2Q13625 1128 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 ADRM1Q16186 407 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 METTL24Q5JXM2 366 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 HECTD2Q5U5R9 776 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 KCNK18Q7Z418 384 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 CRAMP1Q96RY5 1269 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 MYOCQ99972 504 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 ZSWIM1Q9BR11 485 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 CAAP1Q9H8G2 361 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 IFT122Q9HBG6 1241 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 APOBEC2Q9Y235 224 aaKnown RBP3.1□□□□□ -1.91
VPS13A-206ENST00000376646 TMEM200CA6NKL6 621 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 RNASET2O00584 256 aaKnown RBP3.1□□□□□ -1.91
VPS13A-206ENST00000376646 PRSS23O95084 383 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 MUM1Q2TAK8 710 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 CT47A1Q5JQC4 288 aaPredicted RBP3.1□□□□□ -1.91
VPS13A-206ENST00000376646 AFMIDQ63HM1 303 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 SDE2Q6IQ49 451 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 CHAC2Q8WUX2 184 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 ACAP3Q96P50 834 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 DCLRE1CQ96SD1 692 aaKnown RBP3.1□□□□□ -1.91
VPS13A-206ENST00000376646 PACSIN3Q9UKS6 424 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 ATRNL1Q5VV63 1379 aa3.1□□□□□ -1.91
VPS13A-206ENST00000376646 B3GALT2O43825 422 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 PRKD3O94806 890 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 SPDEFO95238 335 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 EYA4O95677 639 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 NUDT3O95989 172 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 ELANEP08246 267 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 RAP2AP10114 183 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 ALOX15P16050 662 aaPredicted RBP3.09□□□□□ -1.91
VPS13A-206ENST00000376646 SLC6A2P23975 617 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 CRHR1P34998 444 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 GPR3P46089 330 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 ALDH1A3P47895 512 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 PTH2RP49190 550 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 FLT3LGP49771 235 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 RESTQ13127 1097 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 NOMO1Q15155 1222 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 ATXN7L2Q5T6C5 722 aaPredicted RBP3.09□□□□□ -1.91
VPS13A-206ENST00000376646 DRICH1Q6PGQ1 229 aaPredicted RBP3.09□□□□□ -1.91
VPS13A-206ENST00000376646 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 MED25Q71SY5 747 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 GPR156Q8NFN8 814 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 ASB10Q8WXI3 467 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 AUTS2Q8WXX7 1259 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 RAX2Q96IS3 184 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 UHRF1Q96T88 793 aaPredicted RBP3.09□□□□□ -1.91
VPS13A-206ENST00000376646 CYP4F11Q9HBI6 524 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 DKK2Q9UBU2 259 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 SCOCQ9UIL1 159 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 AATKQ6ZMQ8 1374 aa3.09□□□□□ -1.91
VPS13A-206ENST00000376646 POLR2AP24928 1970 aaKnown RBP3.09□□□□□ -1.91
VPS13A-206ENST00000376646 GASTP01350 101 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 RBP3P10745 1247 aa3.09□□□□□ -1.92
VPS13A-206ENST00000376646 ECHS1P30084 290 aa3.09□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms