RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 VHLP40337 213 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CLK2P49760 499 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 CACNA2D1P54289 1103 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 MESDQ14696 234 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 GRIK5Q16478 980 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 CTC1Q2NKJ3 1217 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 PARP10Q53GL7 1025 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 SEL1L2Q5TEA6 688 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 INTS5Q6P9B9 1019 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 TXNRD3Q86VQ6 643 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 KSR1Q8IVT5 923 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 RHOT2Q8IXI1 618 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 KBTBD2Q8IY47 623 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 TGFBRAP1Q8WUH2 860 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 C1orf54Q8WWF1 131 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 SCG3Q8WXD2 468 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 AZIN2Q96A70 460 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 BICD1Q96G01 975 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 BTBD6Q96KE9 485 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 EYA3Q99504 573 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 PAIP2Q9BPZ3 127 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 RUSC1Q9BVN2 902 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 VCXQ9H320 206 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 METTL14Q9HCE5 456 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 METTL5Q9NRN9 209 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 TYW1Q9NV66 732 aaKnown RBP7.26□□□□□ -1.25
VPS39-202ENST00000348544 NAV1Q8NEY1 1877 aa7.26□□□□□ -1.25
VPS39-202ENST00000348544 FAM47DPA6NHR8 397 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 FAM196BA6NMK8 535 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 FOXN3O00409 490 aaPredicted RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 MARCH6O60337 910 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 LRRN2O75325 713 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 TJP3O95049 919 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 FTLP02792 175 aaPredicted RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 CYP1A1P04798 512 aaPredicted RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 ATF3P18847 181 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 KCNA3P22001 575 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 RANBP1P43487 201 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 FMO5P49326 533 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 IL9RQ01113 521 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 OCRLQ01968 901 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 PABPC4Q13310 644 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS39-202ENST00000348544 KIF22Q14807 665 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 RCN1Q15293 331 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 TRIP13Q15645 432 aaPredicted RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 ARHGAP44Q17R89 818 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 BMT2Q1RMZ1 405 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 CERKLQ49MI3 558 aaPredicted RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 TAF1BQ53T94 588 aaPredicted RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 ACSBG2Q5FVE4 666 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 ZNF746Q6NUN9 644 aaPredicted RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 PPP1R21Q6ZMI0 780 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 RNF207Q6ZRF8 634 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 DZIP1Q86YF9 867 aaKnown RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 MAPKAPK5Q8IW41 473 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 RPUSD2Q8IZ73 545 aaKnown RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 DENND1AQ8TEH3 1009 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 FBXO41Q8TF61 875 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 MAML1Q92585 1016 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 GATA6Q92908 595 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 TIPINQ9BVW5 301 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 MXD3Q9BW11 206 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 CADM1Q9BY67 442 aaKnown RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 LRRC19Q9H756 370 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 STOML1Q9UBI4 398 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 SCOCQ9UIL1 159 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 C10orf71Q711Q0 1435 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 NHSQ6T4R5 1651 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 MYO3BQ8WXR4 1341 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 DOT1LQ8TEK3 1739 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 RASA4BC9J798 803 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 CLDN3O15551 220 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 RASA4O43374 803 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 THAP12O43422 761 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 EDF1O60869 148 aaKnown RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 TBX10O75333 385 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 DCTN3O75935 186 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 POTEJP0CG39 1038 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 TRIM49P0CI25 452 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 TRIM49CP0CI26 452 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 MUTP22033 750 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 MARK3P27448 753 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 GCAP28676 217 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 PTPN4P29074 926 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 HIBADHP31937 336 aaKnown RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 CDK8P49336 464 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 NT5C2P49902 561 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 ITGA8P53708 1063 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 COG2Q14746 738 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 TMED2Q15363 201 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 ERFEQ4G0M1 354 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 PLEKHG4Q58EX7 1191 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 PHLDB3Q6NSJ2 640 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 ZC3H18Q86VM9 953 aaKnown RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 CATSPER3Q86XQ3 398 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 NEDD1Q8NHV4 660 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 FAM81AQ8TBF8 368 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 MAIP1Q8WWC4 291 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 ATG4AQ8WYN0 398 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 SLCO2A1Q92959 643 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms