RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ODR4Q5SWX8 454 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 CGB2Q6NT52 195 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 C1orf186Q6ZWK4 172 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 CROCCP2Q86T23 111 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 FMNL3Q8IVF7 1028 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 SYCP3Q8IZU3 236 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 LMO3Q8TAP4 145 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 ELMO3Q96BJ8 720 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 PRMT6Q96LA8 375 aaPredicted RBP23.97■■□□□ 1.43
TRIM28-202ENST00000341753 TGS1Q96RS0 853 aaKnown RBP23.97■■□□□ 1.43
TRIM28-202ENST00000341753 FAM167BQ9BTA0 163 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 MTUS1Q9ULD2 1270 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 QSER1Q2KHR3 1735 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 SMCHD1A6NHR9 2005 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 EIF3DO15371 548 aaKnown RBP eCLIP23.97■■□□□ 1.43
TRIM28-202ENST00000341753 GCLMP48507 274 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 BFSP1Q12934 665 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 FAM47EQ6ZV65 393 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 MIGA2Q7L4E1 593 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 FIZ1Q96SL8 496 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 ADAM22Q9P0K1 906 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 ARL2BPQ9Y2Y0 163 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 UPP2O95045 317 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 ZNF131P52739 623 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 CLUL1Q15846 466 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 ABCB5Q2M3G0 1257 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 STRIP1Q5VSL9 837 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 ZNF720Q7Z2F6 126 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 MICAL1Q8TDZ2 1067 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 RUNDC3BQ96NL0 473 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 A0A1W2PRG0 241 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 TBX3O15119 743 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 SLITRK3O94933 977 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 GBP1P32455 592 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 PEX19P40855 299 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 MOXD1Q6UVY6 613 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 SLC17A8Q8NDX2 589 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 FAM20AQ96MK3 541 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 NUP85Q9BW27 656 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 GLT8D2Q9H1C3 349 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 ARHGEF3Q9NR81 526 aa23.96■■□□□ 1.43
TRIM28-202ENST00000341753 CETPP11597 493 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 ANKLE1Q8NAG6 615 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 ZSWIM2Q8NEG5 633 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 PAIP2Q9BPZ3 127 aaKnown RBP23.95■■□□□ 1.42
TRIM28-202ENST00000341753 CHRNB2P17787 502 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 CCND1P24385 295 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 STX2P32856 288 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 SREBF1P36956 1147 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 PPP3CAQ08209 521 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 TBC1D10BQ4KMP7 808 aaPredicted RBP23.95■■□□□ 1.42
TRIM28-202ENST00000341753 PRUNE1Q86TP1 453 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 SRRM1Q8IYB3 904 aaKnown RBP23.95■■□□□ 1.42
TRIM28-202ENST00000341753 CKAP2Q8WWK9 683 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 MKNK1Q9BUB5 465 aa23.95■■□□□ 1.42
TRIM28-202ENST00000341753 POLR3CQ9BUI4 534 aaPredicted RBP23.95■■□□□ 1.42
TRIM28-202ENST00000341753 WRAP73Q9P2S5 460 aaPredicted RBP23.95■■□□□ 1.42
TRIM28-202ENST00000341753 SLX4Q8IY92 1834 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 CLRN2A0PK11 232 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 H0YIN7 160 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 BCRP11274 1271 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 GCKP35557 465 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 ECE1P42892 770 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 NOP9Q86U38 636 aaKnown RBP23.94■■□□□ 1.42
TRIM28-202ENST00000341753 ZNF564Q8TBZ8 553 aaPredicted RBP23.94■■□□□ 1.42
TRIM28-202ENST00000341753 CD101Q93033 1021 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 FAM118BQ9BPY3 351 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 AMNQ9BXJ7 453 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 ROPN1BQ9BZX4 212 aaPredicted RBP23.94■■□□□ 1.42
TRIM28-202ENST00000341753 ROPN1Q9HAT0 212 aaPredicted RBP23.94■■□□□ 1.42
TRIM28-202ENST00000341753 CHST7Q9NS84 486 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 SLC5A4Q9NY91 659 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 NYAP2Q9P242 653 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 TCP10L2B9ZVM9 353 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 GJB6O95452 261 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 TRMT10CQ7L0Y3 403 aaKnown RBP23.94■■□□□ 1.42
TRIM28-202ENST00000341753 CYFIP1Q7L576 1253 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 RXFP1Q9HBX9 757 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 DMAC2Q9NW81 257 aa23.94■■□□□ 1.42
TRIM28-202ENST00000341753 GREB1LQ9C091 1923 aaPredicted RBP23.93■■□□□ 1.42
TRIM28-202ENST00000341753 HADHBP55084 474 aaKnown RBP23.93■■□□□ 1.42
TRIM28-202ENST00000341753 RNASELQ05823 741 aaKnown RBP23.93■■□□□ 1.42
TRIM28-202ENST00000341753 CYP1B1Q16678 543 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 LRCH2Q5VUJ6 765 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 PHLDB2Q86SQ0 1253 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 DCAF4Q8WV16 495 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 MKL1Q969V6 931 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 RPS6KC1Q96S38 1066 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 HSD17B14Q9BPX1 270 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 IDI2Q9BXS1 227 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 WNT8AQ9H1J5 351 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 ETNK1Q9HBU6 452 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.93■■□□□ 1.425e-7■■□□□ 12.4
TRIM28-202ENST00000341753 CYP26A1O43174 497 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 SGO2Q562F6 1265 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 SLC47A2Q86VL8 602 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 FBXO11Q86XK2 927 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 ECHDC2Q86YB7 292 aa23.93■■□□□ 1.42
TRIM28-202ENST00000341753 CALCAP01258 141 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 ZNF568Q3ZCX4 644 aa23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms