RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ESPNB1AK53 854 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 ARHGAP6O43182 974 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 ERLIN2O94905 339 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 CLTAP09496 248 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 SKILP12757 684 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 HOXA11P31270 313 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 ADKP55263 362 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 MGAT3Q09327 533 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 TRIM71Q2Q1W2 868 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 ZBTB41Q5SVQ8 909 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 KLHDC7AQ5VTJ3 777 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 TRIM65Q6PJ69 517 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 ZNF397Q8NF99 534 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 KIAA1524Q8TCG1 905 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 ZNF668Q96K58 619 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 PCMTD1Q96MG8 357 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 ZNF830Q96NB3 372 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 OSMRQ99650 979 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 CGRRF1Q99675 332 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 BAG1Q99933 345 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 TCHPQ9BT92 498 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 CELF4Q9BZC1 486 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 SENP6Q9GZR1 1112 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 UNC93B1Q9H1C4 597 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 PLAGL2Q9UPG8 496 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 TRPV2Q9Y5S1 764 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 PCNTO95613 3336 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 KAT6AQ92794 2004 aa16.19■□□□□ 0.18
CCDC88C-202ENST00000334448 A0A0U1RQG5 324 aaPredicted RBP16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 A0A1W2PQ45 241 aaPredicted RBP16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 A0A1W2PQY0 241 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 B4GALT4O60513 344 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 HSPA8P11142 646 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 UCHL3P15374 230 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 SLC9A1P19634 815 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 GCLMP48507 274 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 ACOT2P49753 483 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 NCBP1Q09161 790 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 ZACNQ401N2 412 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 SLC9C1Q4G0N8 1177 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 FAM26DQ5JW98 314 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 CTU1Q7Z7A3 348 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 WDR49Q8IV35 697 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 EHBP1Q8NDI1 1231 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 PPP1R13LQ8WUF5 828 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 VTI1AQ96AJ9 217 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 CRACR2AQ9BSW2 395 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 INTS2Q9H0H0 1204 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 CDHR5Q9HBB8 845 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 PYCARDQ9ULZ3 195 aa16.18■□□□□ 0.18
CCDC88C-202ENST00000334448 KBTBD13C9JR72 458 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 ZC3H11AO75152 810 aaKnown RBP eCLIP16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 IL18RAPO95256 599 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 GRM5P41594 1212 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 MATR3P43243 847 aaKnown RBP eCLIP16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 GOLGA8FQ08AF8 430 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 GOLGA8DPQ0D2H9 430 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 ENOX2Q16206 610 aaKnown RBP16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 PKN2Q16513 984 aaKnown RBP16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 PTGISQ16647 500 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 FAM47CQ5HY64 1035 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 NOTUMQ6P988 496 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 PDXDC1Q6P996 788 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 SLC27A1Q6PCB7 646 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 SV2AQ7L0J3 742 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 CATSPER4Q7RTX7 472 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 TMTC1Q8IUR5 882 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 TMEM40Q8WWA1 233 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 WNT8BQ93098 351 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 CCDC127Q96BQ5 260 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 ARMC5Q96C12 935 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 FNBP1Q96RU3 617 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 PPP1R16BQ96T49 567 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 ADPGKQ9BRR6 497 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 SQORQ9Y6N5 450 aa16.17■□□□□ 0.18
CCDC88C-202ENST00000334448 M0QZ92 97 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 CSDE1O75534 798 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 C4BPAP04003 597 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 CCL5P13501 91 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 WNT7BP56706 349 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 JAM2P57087 298 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 TMEM62Q0P6H9 643 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 FBXO46Q6PJ61 603 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 WDR59Q6PJI9 974 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 FAM43BQ6ZT52 329 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 ZBTB33Q86T24 672 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 FMNL3Q8IVF7 1028 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 FBXL13Q8NEE6 735 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 CPLX3Q8WVH0 158 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 DHX38Q92620 1227 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 CRISPLD2Q9H0B8 497 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 ASB7Q9H672 318 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 PDE11AQ9HCR9 933 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 APEX2Q9UBZ4 518 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 CDY2AQ9Y6F7 541 aa16.16■□□□□ 0.18
CCDC88C-202ENST00000334448 ARVCFO00192 962 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 ZNF500O60304 480 aaPredicted RBP16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 STAG3L1P0CL83 205 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 DLATP10515 647 aaKnown RBP16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 CAPN2P17655 700 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms