RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 C1orf112Q9NSG2 853 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 RTEL1Q9NZ71 1219 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 CALCOCO1Q9P1Z2 691 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 RAPGEFL1Q9UHV5 662 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 POLHQ9Y253 713 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 PCDHA13Q9Y5I0 950 aa4.33□□□□□ -1.72
HMGB1-201ENST00000326004 MYBBP1AQ9BQG0 1328 aaKnown RBP4.32□□□□□ -1.72
HMGB1-201ENST00000326004 B5MCH6 92 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 H3BML4 177 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 ADCY6O43306 1168 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 HOXA3O43365 443 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-201ENST00000326004 ARIH2O95376 493 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 DDCP20711 480 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 ATP8B2P98198 1209 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 DSC2Q02487 901 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 ZNF267Q14586 743 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-201ENST00000326004 FKBP15Q5T1M5 1219 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 SPOCD1Q6ZMY3 1216 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 DOK3Q7L591 496 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 POLNQ7Z5Q5 900 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 APBB1IPQ7Z5R6 666 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-201ENST00000326004 GRAMD1CQ8IYS0 662 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 CCHCR1Q8TD31 782 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 KAT5Q92993 513 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 RGMAQ96B86 450 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 CLPTM1LQ96KA5 538 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 ZNF512Q96ME7 567 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-201ENST00000326004 GNRHR2Q96P88 292 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 FAM193BQ96PV7 902 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-201ENST00000326004 OR14A2Q96R54 314 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 EPC1Q9H2F5 836 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 ADAM7Q9H2U9 754 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 MAN1C1Q9NR34 630 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 PLA2G3Q9NZ20 509 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 AJAP1Q9UKB5 411 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-201ENST00000326004 ZFR2Q9UPR6 939 aaKnown RBP4.32□□□□□ -1.72
HMGB1-201ENST00000326004 CLCA2Q9UQC9 943 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 PCDHB1Q9Y5F3 818 aa4.32□□□□□ -1.72
HMGB1-201ENST00000326004 VSTM5A8MXK1 200 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 GPR42O15529 346 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 PJA2O43164 708 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 PRICKLE3O43900 615 aaPredicted RBP4.31□□□□□ -1.72
HMGB1-201ENST00000326004 CTNND1O60716 968 aaKnown RBP4.31□□□□□ -1.72
HMGB1-201ENST00000326004 IPO13O94829 963 aaKnown RBP4.31□□□□□ -1.72
HMGB1-201ENST00000326004 AMY1AP04745 511 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 ALOX15P16050 662 aaPredicted RBP4.31□□□□□ -1.72
HMGB1-201ENST00000326004 HOXA5P20719 270 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 FXR1P51114 621 aaKnown RBP eCLIP4.31□□□□□ -1.72
HMGB1-201ENST00000326004 CTXN1P60606 82 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 TARDBPQ13148 414 aaKnown RBP eCLIP4.31□□□□□ -1.72
HMGB1-201ENST00000326004 MTM1Q13496 603 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 GBX1Q14549 363 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 ARHGAP29Q52LW3 1261 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 METTL24Q5JXM2 366 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 ERICH6BQ5W0A0 696 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 OTUD7BQ6GQQ9 843 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 TCTN3Q6NUS6 607 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 GADL1Q6ZQY3 521 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 DENND1CQ8IV53 801 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 FUKQ8N0W3 1084 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 CAMKK1Q8N5S9 505 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 C3orf20Q8ND61 904 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 REPS2Q8NFH8 660 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 IFI44Q8TCB0 444 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 TMX3Q96JJ7 454 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 FAM167AQ96KS9 214 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 MRGPRX4Q96LA9 322 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 SAMD11Q96NU1 681 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 ACO2Q99798 780 aaKnown RBP4.31□□□□□ -1.72
HMGB1-201ENST00000326004 SSBP3Q9BWW4 388 aaPredicted RBP4.31□□□□□ -1.72
HMGB1-201ENST00000326004 LDAHQ9H6V9 325 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 OBP2AQ9NY56 170 aa4.31□□□□□ -1.72
HMGB1-201ENST00000326004 CNOT11Q9UKZ1 510 aaKnown RBP4.31□□□□□ -1.72
HMGB1-201ENST00000326004 ARID1BQ8NFD5 2236 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-201ENST00000326004 ZMYM3Q14202 1370 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 ATRNL1Q5VV63 1379 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 A0A0G2JLL6 359 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-201ENST00000326004 PATE3B3GLJ2 98 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 PRC1O43663 620 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 MFAP3LO75121 409 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 FTLP02792 175 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-201ENST00000326004 ITGB3P05106 788 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 SNRPA1P09661 255 aaKnown RBP4.3□□□□□ -1.72
HMGB1-201ENST00000326004 SYN1P17600 705 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 GNAT2P19087 354 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 PCSK1P29120 753 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 HHEXQ03014 270 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 TLE1Q04724 770 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 FOXL1Q12952 345 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 NFIXQ14938 502 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 MFSD14BQ5SR56 506 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 AFMIDQ63HM1 303 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 TTLL10Q6ZVT0 673 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 NOL8Q76FK4 1167 aaKnown RBP4.3□□□□□ -1.72
HMGB1-201ENST00000326004 FAM83AQ86UY5 434 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 DGKHQ86XP1 1220 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 KRTAP19-1Q8IUB9 90 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 PLXDC1Q8IUK5 500 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 ANKRD35Q8N283 1001 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 D2HGDHQ8N465 521 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms