RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 BORCS6Q96GS4 357 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 RBAKQ9NYW8 714 aaPredicted RBP10.89□□□□□ -0.67
HMGB3-201ENST00000325307 PIN4Q9Y237 131 aaKnown RBP10.89□□□□□ -0.67
HMGB3-201ENST00000325307 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.89□□□□□ -0.674e-8■□□□□ 11.1
HMGB3-201ENST00000325307 ARVCFO00192 962 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 OGTO15294 1046 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 RPLP2P05387 115 aaKnown RBP10.89□□□□□ -0.67
HMGB3-201ENST00000325307 SKILP12757 684 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 DLG4P78352 724 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 MCL1Q07820 350 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 CYP24A1Q07973 514 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 NFX1Q12986 1120 aaKnown RBP10.89□□□□□ -0.67
HMGB3-201ENST00000325307 PTK7Q13308 1070 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 TMEM174Q8WUU8 243 aa10.89□□□□□ -0.67
HMGB3-201ENST00000325307 FAM207AQ9NSI2 230 aaPredicted RBP10.89□□□□□ -0.67
HMGB3-201ENST00000325307 MAPK13O15264 365 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 B4GALT4O60513 344 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 KLK7P49862 253 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 FBXL18Q96ME1 805 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 TRIM6Q9C030 488 aaPredicted RBP10.88□□□□□ -0.67
HMGB3-201ENST00000325307 CDT1Q9H211 546 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 PDZD7Q9H5P4 517 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 PRDM16Q9HAZ2 1276 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 A0A1W2PQC6 194 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 RBAK-RBAKDNI3L0D1 243 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 SGPL1O95470 568 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 TNNI1P19237 187 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 TNFSF9P41273 254 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 GCLMP48507 274 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 MYL7Q01449 175 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 GOLGA8FQ08AF8 430 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 GOLGA8DPQ0D2H9 430 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 APBB1IPQ7Z5R6 666 aaPredicted RBP10.88□□□□□ -0.67
HMGB3-201ENST00000325307 POP1Q99575 1024 aaKnown RBP10.88□□□□□ -0.67
HMGB3-201ENST00000325307 RPS6KA5O75582 802 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 PBX1P40424 430 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 FMO5P49326 533 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 GSDMDP57764 484 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 NOTUMQ6P988 496 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 TMEM139Q8IV31 216 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 ANKRD7Q92527 254 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 C16orf45Q96MC5 204 aaPredicted RBP10.88□□□□□ -0.67
HMGB3-201ENST00000325307 ERGIC2Q96RQ1 377 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 PDE11AQ9HCR9 933 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 PTPRHQ9HD43 1115 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 KCND1Q9NSA2 647 aa10.88□□□□□ -0.67
HMGB3-201ENST00000325307 PQBP1O60828 265 aaKnown RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 CHRNA1P02708 482 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 CETN1Q12798 172 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 TBX2Q13207 712 aaPredicted RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 PCBP1Q15365 356 aaKnown RBP eCLIP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 EXOC3L4Q17RC7 722 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 LMBRD2Q68DH5 695 aaPredicted RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 GBP6Q6ZN66 633 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 CEP120Q8N960 986 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 NEK11Q8NG66 645 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 PARD3BQ8TEW8 1205 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 ARMC5Q96C12 935 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 MFSD14AQ96MC6 490 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 LSM14BQ9BX40 385 aaKnown RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 NOC2LQ9Y3T9 749 aaKnown RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 A0A1B0GUA9 196 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 STX10O60499 249 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 NPTXRO95502 500 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 MCF2P10911 925 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 PROZP22891 400 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 ADKP55263 362 aaKnown RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 RBL2Q08999 1139 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 E4F1Q66K89 784 aaPredicted RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 CRELD2Q6UXH1 353 aaPredicted RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 NYAP1Q6ZVC0 841 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 EGFL6Q8IUX8 553 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 PLEKHO2Q8TD55 490 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 TMX1Q9H3N1 280 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 YY1AP1Q9H869 796 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 TOPORSQ9NS56 1045 aaPredicted RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 GCNT4Q9P109 453 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 ITIH6Q6UXX5 1313 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 LRRIQ3A6PVS8 624 aaPredicted RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 ABLIM1O14639 778 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 GHRP10912 638 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 CASP14P31944 242 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 MXI1P50539 228 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 CBWD6Q4V339 395 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 CBWD3Q5JTY5 395 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 DNTTIP2Q5QJE6 756 aaKnown RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 CBWD5Q5RIA9 395 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 TMC2Q8TDI7 906 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 DHX38Q92620 1227 aaKnown RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 TMEM106CQ9BVX2 250 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 RPF1Q9H9Y2 349 aaKnown RBP10.87□□□□□ -0.67
HMGB3-201ENST00000325307 AGPAT5Q9NUQ2 364 aa10.87□□□□□ -0.67
HMGB3-201ENST00000325307 SIP14410 1827 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 N4BP1O75113 896 aaKnown RBP10.86□□□□□ -0.67
HMGB3-201ENST00000325307 STAG3L1P0CL83 205 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 IBSPP21815 317 aaPredicted RBP10.86□□□□□ -0.67
HMGB3-201ENST00000325307 HOXA11P31270 313 aaPredicted RBP10.86□□□□□ -0.67
HMGB3-201ENST00000325307 PPP3CAQ08209 521 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 TRIM14Q14142 442 aa10.86□□□□□ -0.67
HMGB3-201ENST00000325307 ZNF618Q5T7W0 954 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms