RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 DDX20Q9UHI6 824 aaKnown RBP15.68■□□□□ 0.1
TCOF1-201ENST00000323668 CPP00450 1065 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 SURF1Q15526 300 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 MAP3K21Q5TCX8 1036 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 SCARA5Q6ZMJ2 495 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 SEPT14Q6ZU15 432 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 ARSEP51690 589 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 KLHL38Q2WGJ6 581 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 NT5DC3Q86UY8 548 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 CD302Q8IX05 232 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 SMC1BQ8NDV3 1235 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 CPA5Q8WXQ8 436 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 PCDHA10Q9Y5I2 948 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 LMNAP02545 664 aaKnown RBP15.67■□□□□ 0.1
TCOF1-201ENST00000323668 ZNF720Q7Z2F6 126 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 KCNV2Q8TDN2 545 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 FAM163AQ96GL9 167 aaPredicted RBP15.67■□□□□ 0.1
TCOF1-201ENST00000323668 TRABDQ9H4I3 376 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 KRT37O76014 449 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 Q4G0T1 1027 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 SWSAP1Q6NVH7 229 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 BTNL9Q6UXG8 535 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 TRIM50Q86XT4 487 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 SERPINB12Q96P63 405 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 STOML1Q9UBI4 398 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 PPP1R9AQ9ULJ8 1098 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 COMMD10Q9Y6G5 202 aa15.67■□□□□ 0.1
TCOF1-201ENST00000323668 ENTPD3O75355 529 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 IL1R1P14778 569 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 EPS8L3Q8TE67 593 aaKnown RBP15.66■□□□□ 0.1
TCOF1-201ENST00000323668 OSBPL8Q9BZF1 889 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 TMEM117Q9H0C3 514 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 QTRT2Q9H974 415 aaKnown RBP15.66■□□□□ 0.1
TCOF1-201ENST00000323668 PARVAQ9NVD7 372 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 BCAP29Q9UHQ4 241 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 SCOCQ9UIL1 159 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 FAM47DPA6NHR8 397 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 PSMC4P43686 418 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 ITGA8P53708 1063 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 TFDP1Q14186 410 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 LMBRD2Q68DH5 695 aaPredicted RBP15.66■□□□□ 0.1
TCOF1-201ENST00000323668 ZNF354CQ86Y25 554 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 MAML1Q92585 1016 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 HAS1Q92839 578 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 ADPGKQ9BRR6 497 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 PCDHB2Q9Y5E7 798 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 RGPD1P0DJD0 1748 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 A6NJR5 290 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 IQCKQ8N0W5 287 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 ATP11CQ8NB49 1132 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 PRPSAP2O60256 369 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 GZMAP12544 262 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 PRKCIP41743 596 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 OSTNP61366 133 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 INPP4AQ96PE3 977 aaPredicted RBP15.66■□□□□ 0.1
TCOF1-201ENST00000323668 MXRA8Q9BRK3 442 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 FOXP3Q9BZS1 431 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 TTYH3Q9C0H2 523 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 SEMA4AQ9H3S1 761 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 TMEM8AQ9HCN3 771 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 AGO2Q9UKV8 859 aaKnown RBP15.66■□□□□ 0.1
TCOF1-201ENST00000323668 SMG5Q9UPR3 1016 aaKnown RBP15.66■□□□□ 0.1
TCOF1-201ENST00000323668 CAMTA1Q9Y6Y1 1673 aa15.66■□□□□ 0.1
TCOF1-201ENST00000323668 PI4K2BG5E9Z4 385 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 RGL2O15211 777 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 HAUS5O94927 633 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 P3H1Q32P28 736 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 FOXR2Q6PJQ5 311 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 SUGP1Q8IWZ8 645 aaKnown RBP15.65■□□□□ 0.1
TCOF1-201ENST00000323668 RGPD8O14715 1765 aaPredicted RBP15.65■□□□□ 0.1
TCOF1-201ENST00000323668 COPEO14579 308 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 OPHN1O60890 802 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 SNRPFP62306 86 aaKnown RBP15.65■□□□□ 0.1
TCOF1-201ENST00000323668 PAGR1Q9BTK6 254 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 NOD2Q9HC29 1040 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 RBAKQ9NYW8 714 aaPredicted RBP15.65■□□□□ 0.1
TCOF1-201ENST00000323668 DIAPH2O60879 1101 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 SRGAP2CP0DJJ0 459 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 ATG16L1Q676U5 607 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 OR6B2Q6IFH4 312 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 IFT122Q9HBG6 1241 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 STRIP2Q9ULQ0 834 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 USH1CQ9Y6N9 552 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 CDR2Q01850 454 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 ITIH4Q14624 930 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 NSUN6Q8TEA1 469 aaKnown RBP15.65■□□□□ 0.1
TCOF1-201ENST00000323668 NUDCD1Q96RS6 583 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 KDM4CQ9H3R0 1056 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 MYO3BQ8WXR4 1341 aa15.65■□□□□ 0.1
TCOF1-201ENST00000323668 SGPL1O95470 568 aa15.64■□□□□ 0.09
TCOF1-201ENST00000323668 KRT7P08729 469 aa15.64■□□□□ 0.09
TCOF1-201ENST00000323668 GRIK5Q16478 980 aa15.64■□□□□ 0.09
TCOF1-201ENST00000323668 SLC27A3Q5K4L6 730 aa15.64■□□□□ 0.09
TCOF1-201ENST00000323668 KRT27Q7Z3Y8 459 aa15.64■□□□□ 0.09
TCOF1-201ENST00000323668 ATP8B4Q8TF62 1192 aa15.64■□□□□ 0.09
TCOF1-201ENST00000323668 RNF34Q969K3 372 aa15.64■□□□□ 0.09
TCOF1-201ENST00000323668 PURBQ96QR8 312 aaKnown RBP15.64■□□□□ 0.09
TCOF1-201ENST00000323668 RNF146Q9NTX7 359 aa15.64■□□□□ 0.09
TCOF1-201ENST00000323668 NEU2Q9Y3R4 380 aa15.64■□□□□ 0.09
TCOF1-201ENST00000323668 MAP3K7O43318 606 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms