RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GTF3C4Q9UKN8 822 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 CEMIPQ8WUJ3 1361 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 TNFAIP8O95379 198 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 CYP21A2P08686 494 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 DNAJB1P25685 340 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 SERPINB5P36952 375 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 ATN1P54259 1190 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-201ENST00000303395 RAB25P57735 213 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 GPC5P78333 572 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 ACVR2BQ13705 512 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 SGO2Q562F6 1265 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 TTC30BQ8N4P2 665 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 TRIML2Q8N7C3 387 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 EFHBQ8N7U6 833 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 LSM14BQ9BX40 385 aaKnown RBP5.54□□□□□ -1.52
SCN1A-201ENST00000303395 MOV10Q9HCE1 1003 aaKnown RBP5.54□□□□□ -1.52
SCN1A-201ENST00000303395 IP6K2Q9UHH9 426 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 SYCE1LA8MT33 242 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 SUPT3HB4E1H0 165 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 PAMP19021 973 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 KRT6CP48668 564 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 FAM69CQ0P6D2 419 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 STX3Q13277 289 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 THOC7Q6I9Y2 204 aaKnown RBP5.54□□□□□ -1.52
SCN1A-201ENST00000303395 NDUFAF2Q8N183 169 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 LARGE2Q8N3Y3 721 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 USP38Q8NB14 1042 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 NAF1Q96HR8 494 aaKnown RBP5.54□□□□□ -1.52
SCN1A-201ENST00000303395 ZFYVE19Q96K21 471 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 PHACTR3Q96KR7 559 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 BTBD9Q96Q07 612 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 STK33Q9BYT3 514 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 PLEKHA5Q9HAU0 1116 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 INTS13Q9NVM9 706 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 SNX5Q9Y5X3 404 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 FRMPD4Q14CM0 1322 aa5.54□□□□□ -1.52
SCN1A-201ENST00000303395 TLR3O15455 904 aaKnown RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ZNF12P17014 697 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 PTPN4P29074 926 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 STAT2P52630 851 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 DAB2P98082 770 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 DSG1Q02413 1049 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 TNFAIP1Q13829 316 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 CCDC85BQ15834 202 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 TAF1BQ53T94 588 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 KIAA1755Q5JYT7 1200 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 RHOT1Q8IXI2 618 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 IFNL3Q8IZI9 196 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 RBBP8NLQ8NC74 664 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 PAGE5Q96GU1 130 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 MED10Q9BTT4 135 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 CCDC87Q9NVE4 849 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 KIF17Q9P2E2 1029 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 UBA2Q9UBT2 640 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 STOML2Q9UJZ1 356 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ST14Q9Y5Y6 855 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ALKQ9UM73 1620 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ZNF197O14709 1029 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 EYA4O95677 639 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 RFC4P35249 363 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 COPZ1P61923 177 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 STX5Q13190 355 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 SBK1Q52WX2 424 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 DCAF4Q8WV16 495 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 S100ZQ8WXG8 99 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 TP53INP1Q96A56 240 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 TTC17Q96AE7 1141 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 SMARCAD1Q9H4L7 1026 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 EML4Q9HC35 981 aaKnown RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 GPAMQ9HCL2 828 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 COPG2Q9UBF2 871 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 TRPC5Q9UL62 973 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 CARNS1A5YM72 827 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 SAGE2PA6NJ88 616 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ZBBXA8MT70 800 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 PARNO95453 639 aaKnown RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 HNRNPH1P31943 449 aaKnown RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ARFIP2P53365 341 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ZC3H6P61129 1189 aaKnown RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 PFKFB3Q16875 520 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 TTC27Q6P3X3 843 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 PCYOX1LQ8NBM8 494 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 EAF2Q96CJ1 260 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 AMNQ9BXJ7 453 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 OSBPL1AQ9BXW6 950 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 AASDHPPTQ9NRN7 309 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 SESN1Q9Y6P5 492 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ROBO3Q96MS0 1386 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ATRNO75882 1429 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 SALL3Q9BXA9 1300 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 GAS2O43903 313 aaKnown RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 STAM2O75886 525 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 CA4P22748 312 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ATP2B4P23634 1241 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 PNOCQ13519 176 aa5.53□□□□□ -1.52
SCN1A-201ENST00000303395 DCAF17Q5H9S7 520 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 TCHHL1Q5QJ38 904 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-201ENST00000303395 ESRP1Q6NXG1 681 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms