RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 WDR90Q96KV7 1748 aa21.59■■□□□ 1.05
VPS53-201ENST00000291074 GRIN2DO15399 1336 aa21.58■■□□□ 1.05
VPS53-201ENST00000291074 KRT5P13647 590 aa21.58■■□□□ 1.05
VPS53-201ENST00000291074 ATP4AP20648 1035 aa21.58■■□□□ 1.05
VPS53-201ENST00000291074 PDE6CP51160 858 aa21.58■■□□□ 1.05
VPS53-201ENST00000291074 GNGT1P63211 74 aa21.58■■□□□ 1.05
VPS53-201ENST00000291074 ZNF516Q92618 1163 aa21.58■■□□□ 1.05
VPS53-201ENST00000291074 ZNF653Q96CK0 615 aa21.58■■□□□ 1.05
VPS53-201ENST00000291074 ZSWIM1Q9BR11 485 aa21.58■■□□□ 1.05
VPS53-201ENST00000291074 NUP85Q9BW27 656 aa21.58■■□□□ 1.05
VPS53-201ENST00000291074 TRPC6Q9Y210 931 aa21.58■■□□□ 1.05
VPS53-201ENST00000291074 SUPT20HL2P0C7V6 817 aa21.58■■□□□ 1.04
VPS53-201ENST00000291074 GZMAP12544 262 aa21.58■■□□□ 1.04
VPS53-201ENST00000291074 CDR2Q01850 454 aa21.58■■□□□ 1.04
VPS53-201ENST00000291074 EMC2Q15006 297 aa21.58■■□□□ 1.04
VPS53-201ENST00000291074 GNPTABQ3T906 1256 aa21.58■■□□□ 1.04
VPS53-201ENST00000291074 SUPT20HL1Q3ZLR7 823 aa21.58■■□□□ 1.04
VPS53-201ENST00000291074 CD302Q8IX05 232 aa21.58■■□□□ 1.04
VPS53-201ENST00000291074 ATP8B4Q8TF62 1192 aa21.58■■□□□ 1.04
VPS53-201ENST00000291074 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.58■■□□□ 1.041e-7■■■■□ 26.6
VPS53-201ENST00000291074 IFT74Q96LB3 600 aa21.58■■□□□ 1.04
VPS53-201ENST00000291074 RSPH14Q9UHP6 348 aa21.58■■□□□ 1.04
VPS53-201ENST00000291074 UTP11Q9Y3A2 253 aaKnown RBP21.58■■□□□ 1.04
VPS53-201ENST00000291074 ATP2A1O14983 1001 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 DKC1O60832 514 aaKnown RBP eCLIP21.57■■□□□ 1.043e-11■■■□□ 15.6
VPS53-201ENST00000291074 CLSTN1O94985 981 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 BRDTQ58F21 947 aaPredicted RBP21.57■■□□□ 1.04
VPS53-201ENST00000291074 MIS18BP1Q6P0N0 1132 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 ZNF564Q8TBZ8 553 aaPredicted RBP21.57■■□□□ 1.04
VPS53-201ENST00000291074 DDX1Q92499 740 aaKnown RBP21.57■■□□□ 1.04
VPS53-201ENST00000291074 CDHR1Q96JP9 859 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 MTFR1LQ9H019 292 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 POLGP54098 1239 aaPredicted RBP21.57■■□□□ 1.04
VPS53-201ENST00000291074 DR1Q01658 176 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 PDCLQ13371 301 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 TCEAL1Q15170 157 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 ZDHHC14Q8IZN3 488 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 SEC14L1Q92503 715 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 LTBP3Q9NS15 1303 aa21.57■■□□□ 1.04
VPS53-201ENST00000291074 LIG4P49917 911 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 SEPT14Q6ZU15 432 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 ASAP3Q8TDY4 903 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 UBLCP1Q8WVY7 318 aaPredicted RBP21.56■■□□□ 1.04
VPS53-201ENST00000291074 C18orf8Q96DM3 657 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 CENPHQ9H3R5 247 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 AFG3L2Q9Y4W6 797 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 LOC285556D6RIA3 1793 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 GARTP22102 1010 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 ACOT2P49753 483 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 HIRAP54198 1017 aaPredicted RBP21.56■■□□□ 1.04
VPS53-201ENST00000291074 NLRP11P59045 1033 aaKnown RBP21.56■■□□□ 1.04
VPS53-201ENST00000291074 XKR3Q5GH77 459 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 UBL4BQ8N7F7 174 aa21.56■■□□□ 1.04
VPS53-201ENST00000291074 GOLGA6L10A0A0M3HER8 536 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 MIF4GDA9UHW6 222 aaKnown RBP21.55■■□□□ 1.04
VPS53-201ENST00000291074 H0YGN5 161 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 PEX5P50542 639 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 RTP1P59025 263 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 LRRC45Q96CN5 670 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 ZBTB45Q96K62 511 aaPredicted RBP21.55■■□□□ 1.04
VPS53-201ENST00000291074 NAP1L3Q99457 506 aaPredicted RBP21.55■■□□□ 1.04
VPS53-201ENST00000291074 HAPLN2Q9GZV7 340 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 NFS1Q9Y697 457 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 PTPRJQ12913 1337 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 SYNGAP1Q96PV0 1343 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 TCRBV7S2A1N4TA0A589 114 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 GRIN3BO60391 1043 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 PPFIA4O75335 1185 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 MTA2O94776 668 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 CYP1A2P05177 515 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 PYGMP11217 842 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 CTNNA1P35221 906 aaKnown RBP21.55■■□□□ 1.04
VPS53-201ENST00000291074 SKOR1P84550 965 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 PPARDQ03181 441 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 TREML2Q5T2D2 321 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 CNKSR2Q8WXI2 1034 aa21.55■■□□□ 1.04
VPS53-201ENST00000291074 GTF2H1P32780 548 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 LLGL1Q15334 1064 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 SPOPLQ6IQ16 392 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 TMC3Q7Z5M5 1100 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 USP37Q86T82 979 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 PRELID2Q8N945 189 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 CD101Q93033 1021 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 ATP6V1G3Q96LB4 118 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 ZNF302Q9NR11 478 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 FAM114A2Q9NRY5 505 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 HOXC10Q9NYD6 342 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 GTF3C4Q9UKN8 822 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 SPOPO43791 374 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 ZBTB41Q5SVQ8 909 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 PHLDB2Q86SQ0 1253 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 ANKRD35Q8N283 1001 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 RPS6KC1Q96S38 1066 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 PTPRFP10586 1907 aa21.54■■□□□ 1.04
VPS53-201ENST00000291074 LRRIQ4A6NIV6 560 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 EIF3HO15372 352 aaKnown RBP eCLIP21.53■■□□□ 1.047e-7■□□□□ 9.9
VPS53-201ENST00000291074 DHX9Q08211 1270 aaKnown RBP21.53■■□□□ 1.04
VPS53-201ENST00000291074 ZNF844Q08AG5 666 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 STXBP2Q15833 593 aa21.53■■□□□ 1.04
VPS53-201ENST00000291074 JAMLQ86YT9 394 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms