RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TMEM39BQ9GZU3 492 aa20.08■□□□□ 0.81
CPSF3-201ENST00000238112 RIPK2O43353 540 aa20.08■□□□□ 0.8
CPSF3-201ENST00000238112 IFI35P80217 286 aaPredicted RBP20.08■□□□□ 0.8
CPSF3-201ENST00000238112 SPP2Q13103 211 aa20.08■□□□□ 0.8
CPSF3-201ENST00000238112 SWT1Q5T5J6 900 aaKnown RBP20.08■□□□□ 0.8
CPSF3-201ENST00000238112 CPNE8Q86YQ8 564 aa20.08■□□□□ 0.8
CPSF3-201ENST00000238112 CLEC4DQ8WXI8 215 aa20.08■□□□□ 0.8
CPSF3-201ENST00000238112 NT5C1BQ96P26 610 aa20.08■□□□□ 0.8
CPSF3-201ENST00000238112 TMEM109Q9BVC6 243 aa20.08■□□□□ 0.8
CPSF3-201ENST00000238112 TMEM8AQ9HCN3 771 aa20.08■□□□□ 0.8
CPSF3-201ENST00000238112 ASTN2O75129 1339 aaPredicted RBP20.07■□□□□ 0.8
CPSF3-201ENST00000238112 TBC1D12O60347 775 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 KCNJ1P48048 391 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 MRPS9P82933 396 aaKnown RBP20.07■□□□□ 0.8
CPSF3-201ENST00000238112 UGCGQ16739 394 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 SPDYE2Q495Y8 402 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 XKR9Q5GH70 373 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 NSMFQ6X4W1 530 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 CCDC25Q86WR0 208 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 CDAN1Q8IWY9 1227 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 C4orf19Q8IY42 314 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 C12orf50Q8NA57 414 aaPredicted RBP20.07■□□□□ 0.8
CPSF3-201ENST00000238112 EPS8L3Q8TE67 593 aaKnown RBP20.07■□□□□ 0.8
CPSF3-201ENST00000238112 INTS9Q9NV88 658 aaKnown RBP20.07■□□□□ 0.8
CPSF3-201ENST00000238112 TBX20Q9UMR3 447 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 ANKRD63C9JTQ0 380 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 RASGRF2O14827 1237 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 SLCO1A2P46721 670 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 PSMC5P62195 406 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 CPXCR1Q8N123 301 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 ANKS4BQ8N8V4 417 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 CCDC197Q8NCU1 140 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 HELQQ8TDG4 1101 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 PARD3BQ8TEW8 1205 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 ATXN2LQ8WWM7 1075 aaKnown RBP20.07■□□□□ 0.8
CPSF3-201ENST00000238112 SLC40A1Q9NP59 571 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 HOMER2Q9NSB8 354 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 KLC4Q9NSK0 619 aa20.07■□□□□ 0.8
CPSF3-201ENST00000238112 RAD17O75943 681 aa20.06■□□□□ 0.8
CPSF3-201ENST00000238112 ADSSP30520 456 aa20.06■□□□□ 0.8
CPSF3-201ENST00000238112 GPC3P51654 580 aa20.06■□□□□ 0.8
CPSF3-201ENST00000238112 DMP1Q13316 513 aaPredicted RBP20.06■□□□□ 0.8
CPSF3-201ENST00000238112 SIX1Q15475 284 aaPredicted RBP20.06■□□□□ 0.8
CPSF3-201ENST00000238112 PLA2G4FQ68DD2 849 aa20.06■□□□□ 0.8
CPSF3-201ENST00000238112 FBXL13Q8NEE6 735 aa20.06■□□□□ 0.8
CPSF3-201ENST00000238112 ZNF317Q96PQ6 595 aaPredicted RBP20.06■□□□□ 0.8
CPSF3-201ENST00000238112 POP1Q99575 1024 aaKnown RBP20.06■□□□□ 0.8
CPSF3-201ENST00000238112 ZNF341Q9BYN7 854 aa20.06■□□□□ 0.8
CPSF3-201ENST00000238112 ADAM7Q9H2U9 754 aa20.06■□□□□ 0.8
CPSF3-201ENST00000238112 DNM1LO00429 736 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 APBA3O96018 575 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 ASNSP08243 561 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 DLATP10515 647 aaKnown RBP20.05■□□□□ 0.8
CPSF3-201ENST00000238112 EIF2AK2P19525 551 aaKnown RBP20.05■□□□□ 0.8
CPSF3-201ENST00000238112 CNGA1P29973 690 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 UBAP2Q5T6F2 1119 aaKnown RBP20.05■□□□□ 0.8
CPSF3-201ENST00000238112 ACAD10Q6JQN1 1059 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 TAOK1Q7L7X3 1001 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 USP37Q86T82 979 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 CCDC113Q9H0I3 377 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 LRRC19Q9H756 370 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 RAB20Q9NX57 234 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 COQ4Q9Y3A0 265 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 PLSCR1O15162 318 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 CLDN3O15551 220 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 RASSF9O75901 435 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 JAK3P52333 1124 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 SPRED3Q2MJR0 410 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 LACTB2Q53H82 288 aaPredicted RBP20.05■□□□□ 0.8
CPSF3-201ENST00000238112 SGO2Q562F6 1265 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 MAP4K3Q8IVH8 894 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 TMEM161BQ8NDZ6 487 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 SYTL5Q8TDW5 730 aaPredicted RBP20.05■□□□□ 0.8
CPSF3-201ENST00000238112 TAS1R2Q8TE23 839 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 KIFC3Q9BVG8 833 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 KDM4CQ9H3R0 1056 aa20.05■□□□□ 0.8
CPSF3-201ENST00000238112 WDR64B1ANS9 1081 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 ATP2C2O75185 946 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 SCTRP47872 440 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 HVCN1Q96D96 273 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 ANKEF1Q9NU02 776 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 DENND3A2RUS2 1198 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 ASAP2O43150 1006 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 MYCLP12524 364 aaPredicted RBP20.04■□□□□ 0.8
CPSF3-201ENST00000238112 KRT5P13647 590 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 NPTX2P47972 431 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 MCCD1P59942 119 aaPredicted RBP20.04■□□□□ 0.8
CPSF3-201ENST00000238112 KRT17Q04695 432 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 TRMT10CQ7L0Y3 403 aaKnown RBP20.04■□□□□ 0.8
CPSF3-201ENST00000238112 CCT6BQ92526 530 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 PRMT1Q99873 361 aaKnown RBP20.04■□□□□ 0.8
CPSF3-201ENST00000238112 RAVER2Q9HCJ3 691 aaKnown RBP20.04■□□□□ 0.8
CPSF3-201ENST00000238112 KMT5AQ9NQR1 393 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 TOPORSQ9NS56 1045 aaPredicted RBP20.04■□□□□ 0.8
CPSF3-201ENST00000238112 SAMD15Q9P1V8 674 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 ANAPC7Q9UJX3 599 aa20.04■□□□□ 0.8
CPSF3-201ENST00000238112 BRWD3Q6RI45 1802 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 C21orf2O43822 256 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 MAPK4P31152 587 aa20.03■□□□□ 0.8
CPSF3-201ENST00000238112 AUHQ13825 339 aaKnown RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms