RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 TTLL13PA6NNM8 815 aa16.1■□□□□ 0.17
CCDC47-201ENST00000225726 MBTD1Q05BQ5 628 aa16.1■□□□□ 0.17
CCDC47-201ENST00000225726 MCL1Q07820 350 aa16.1■□□□□ 0.17
CCDC47-201ENST00000225726 KIF22Q14807 665 aa16.1■□□□□ 0.17
CCDC47-201ENST00000225726 TSHZ1Q6ZSZ6 1077 aa16.1■□□□□ 0.17
CCDC47-201ENST00000225726 IFNLR1Q8IU57 520 aaPredicted RBP16.1■□□□□ 0.17
CCDC47-201ENST00000225726 CGRRF1Q99675 332 aa16.1■□□□□ 0.17
CCDC47-201ENST00000225726 TULP1O00294 542 aaPredicted RBP16.09■□□□□ 0.17
CCDC47-201ENST00000225726 ZC3H11AO75152 810 aaKnown RBP eCLIP16.09■□□□□ 0.17
CCDC47-201ENST00000225726 CYP2C19P33261 490 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 BMS1Q14692 1282 aaKnown RBP16.09■□□□□ 0.17
CCDC47-201ENST00000225726 TLK2Q86UE8 772 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 TAS1R2Q8TE23 839 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 NT5C1BQ96P26 610 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 NENFQ9UMX5 172 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 MACROD2A1Z1Q3 448 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 ABLIM1O14639 778 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 LRRN2O75325 713 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 PROZP22891 400 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 MFAP3P55082 362 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 ZBTB41Q5SVQ8 909 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 ZNF516Q92618 1163 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 AKT3Q9Y243 479 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 Q9Y3F1 56 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 RRN3P2A6NIE6 340 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 INO80B-WBP1J3KQ70 363 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 OGTO15294 1046 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 FAM189A1O60320 539 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 GRM1Q13255 1194 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 PRPF4BQ13523 1007 aaKnown RBP16.09■□□□□ 0.17
CCDC47-201ENST00000225726 FAM187BQ17R55 369 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 MPZL3Q6UWV2 235 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 BRSK2Q8IWQ3 736 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 INO80BQ9C086 356 aaPredicted RBP16.09■□□□□ 0.17
CCDC47-201ENST00000225726 PDE11AQ9HCR9 933 aa16.09■□□□□ 0.17
CCDC47-201ENST00000225726 PRMT7Q9NVM4 692 aaPredicted RBP16.09■□□□□ 0.17
CCDC47-201ENST00000225726 CNTNAP2Q9UHC6 1331 aa16.08■□□□□ 0.17
CCDC47-201ENST00000225726 FOXN3O00409 490 aaPredicted RBP16.08■□□□□ 0.16
CCDC47-201ENST00000225726 TACC1O75410 805 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 HARSP12081 509 aaKnown RBP16.08■□□□□ 0.16
CCDC47-201ENST00000225726 TNNI1P19237 187 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 NAB2Q15742 525 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 ATF7IP2Q5U623 682 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 ZBTB33Q86T24 672 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 ZIC5Q96T25 663 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 TCHPQ9BT92 498 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 C4BPAP04003 597 aaKnown RBP16.08■□□□□ 0.16
CCDC47-201ENST00000225726 WNT7BP56706 349 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 ZACNQ401N2 412 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 MARCH8Q5T0T0 291 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 RNF10Q8N5U6 811 aaKnown RBP16.08■□□□□ 0.16
CCDC47-201ENST00000225726 TRIM58Q8NG06 486 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 FAM81BQ96LP2 452 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 SYT11Q9BT88 431 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 IFT122Q9HBG6 1241 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 PTPRHQ9HD43 1115 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 NAGPAQ9UK23 515 aa16.08■□□□□ 0.16
CCDC47-201ENST00000225726 ALDH1A1P00352 501 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 F2P00734 622 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 HELQQ8TDG4 1101 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 ZNF668Q96K58 619 aaPredicted RBP16.07■□□□□ 0.16
CCDC47-201ENST00000225726 MAP7D2Q96T17 732 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 BTNL10A8MVZ5 291 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 CTGFP29279 349 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 PPM1KQ8N3J5 372 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 SLC30A5Q8TAD4 765 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 OLIG1Q8TAK6 271 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 KREMEN1Q96MU8 473 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 MINDY3Q9H8M7 445 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 CDC23Q9UJX2 597 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 TNFSF13BQ9Y275 285 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 ANO9A1A5B4 782 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 DDX3XO00571 662 aaKnown RBP eCLIP16.07■□□□□ 0.161e-27■■■□□ 18.3
CCDC47-201ENST00000225726 CPT1AP50416 773 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 AP3M2P53677 418 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 FCGRTP55899 365 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 ALKBH5Q6P6C2 394 aaKnown RBP16.07■□□□□ 0.16
CCDC47-201ENST00000225726 ENOSF1Q7L5Y1 443 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 ALS2CR12Q96Q35 445 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 AP5M1Q9H0R1 490 aa16.07■□□□□ 0.16
CCDC47-201ENST00000225726 A0A087WZ62 844 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 ZEB2O60315 1214 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 SURF1Q15526 300 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 TMEM132AQ24JP5 1023 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 TDRD10Q5VZ19 366 aaKnown RBP16.06■□□□□ 0.16
CCDC47-201ENST00000225726 LMBRD2Q68DH5 695 aaPredicted RBP16.06■□□□□ 0.16
CCDC47-201ENST00000225726 MNS1Q8NEH6 495 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 SHC3Q92529 594 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 FDXACB1Q9BRP7 624 aaPredicted RBP16.06■□□□□ 0.16
CCDC47-201ENST00000225726 CPSF3Q9UKF6 684 aaKnown RBP16.06■□□□□ 0.16
CCDC47-201ENST00000225726 PTPRJQ12913 1337 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 MOCS3O95396 460 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 HLA-DRAP01903 254 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 VTNP04004 478 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 KIAA0753Q2KHM9 967 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 ZNF568Q3ZCX4 644 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 FAM71AQ8IYT1 594 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 LNX1Q8TBB1 728 aaPredicted RBP16.06■□□□□ 0.16
CCDC47-201ENST00000225726 KAT5Q92993 513 aa16.06■□□□□ 0.16
CCDC47-201ENST00000225726 NOX5Q96PH1 765 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms