RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CUEDC1Q9NWM3 386 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 TXNDC16Q9P2K2 825 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 EPS15L1Q9UBC2 864 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ZMYM3Q14202 1370 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 MCF2P10911 925 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ACADMP11310 421 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ATP1A3P13637 1013 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 KELP23276 732 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 KIF23Q02241 960 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 FCHO2Q0JRZ9 810 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PPP2R5DQ14738 602 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PDXDC2PQ6P474 469 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 TOGARAM2Q6ZUX3 1019 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 TTC29Q8NA56 475 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 TTC13Q8NBP0 860 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 RSAD2Q8WXG1 361 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PANX2Q96RD6 677 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 C1orf21Q9H246 121 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 KIAA1586Q9HCI6 787 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ABCB9Q9NP78 766 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 STAG3Q9UJ98 1225 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PRRC2BQ5JSZ5 2229 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 GPR89AB7ZAQ6 455 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 TEX46H3BTG2 121 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SNPHO15079 494 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 DAPK3O43293 454 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 BAIAP3O94812 1187 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 GPR89BP0CG08 455 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ALOX12P18054 663 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 HTR2BP41595 481 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 BCAP31P51572 246 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 NFYCQ13952 458 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ATG14Q6ZNE5 492 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 USP38Q8NB14 1042 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SGCDQ92629 289 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 S100PBPQ96BU1 408 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 FAXDC2Q96IV6 333 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 DEPDC7Q96QD5 511 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 CRB3Q9BUF7 120 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF219Q9P2Y4 722 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 NCKAP5O14513 1909 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ZC3H11AO75152 810 aaKnown RBP eCLIP3.79□□□□□ -1.82e-6■□□□□ 9.4
SCN1A-221ENST00000641996 IL32P24001 234 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ETV1P50549 477 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 RNASE9P60153 205 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PLCB3Q01970 1234 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 APBA1Q02410 837 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 MORF4L2Q15014 288 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ANKRD40Q6AI12 368 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 DUS1LQ6P1R4 473 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 APLFQ8IW19 511 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 UBL4BQ8N7F7 174 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ZC3H10Q96K80 434 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 DNAJC1Q96KC8 554 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 DACT1Q9NYF0 836 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 THEGQ9P2T0 379 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 AURKCQ9UQB9 309 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 H7C1Q1 480 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 KCNJ13O60928 360 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 MICAL2O94851 1124 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 NCF1P14598 390 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ARF4P18085 180 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 MAP4P27816 1152 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 RAD23BP54727 409 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PPP2R2AP63151 447 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 RNF4P78317 190 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ARHGEF16Q5VV41 709 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 SLC2A7Q6PXP3 512 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 EPHX4Q8IUS5 362 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ESX1Q8N693 406 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 HEXDCQ8WVB3 486 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 MYD88Q99836 296 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ATP8A2Q9NTI2 1148 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ANKEF1Q9NU02 776 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PSD3Q9NYI0 1048 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 AP3M1Q9Y2T2 418 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 RASSF9O75901 435 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ECDO95905 644 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 MAPKAPK3Q16644 382 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 GLE1Q53GS7 698 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CUZD1Q86UP6 607 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CNGA4Q8IV77 575 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 FBXO22Q8NEZ5 403 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 USP13Q92995 863 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ANKRD36BP1Q96IX9 119 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 FAM167AQ96KS9 214 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PKP4Q99569 1192 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 VPS33BQ9H267 617 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 SLC40A1Q9NP59 571 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 DPP7Q9UHL4 492 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CORO2BQ9UQ03 480 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 MRPS7Q9Y2R9 242 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ARL2BPQ9Y2Y0 163 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ZSCAN5BA6NJL1 495 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 GLAP06280 429 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF806P0C7X5 589 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ETS2P15036 469 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PRIM2P49643 509 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 C19orf57Q0VDD7 668 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 LPIN1Q14693 890 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms