RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 OATP04181 439 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 HELQQ8TDG4 1101 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 IFT81Q8WYA0 676 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 RIN2Q8WYP3 895 aaPredicted RBP23.21■■□□□ 1.31
CLN6-224ENST00000638076 CALR3Q96L12 384 aaKnown RBP23.21■■□□□ 1.31
CLN6-224ENST00000638076 ACP6Q9NPH0 428 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 FBXO40Q9UH90 709 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 NOCTQ9UK39 431 aaKnown RBP23.21■■□□□ 1.31
CLN6-224ENST00000638076 AGPSO00116 658 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 RNF40O75150 1001 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 GTF2H1P32780 548 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 GADL1Q6ZQY3 521 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 SV2AQ7L0J3 742 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 SLC47A2Q86VL8 602 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 CAVIN3Q969G5 261 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 NT5C1BQ96P26 610 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 PCDHB18PQ96TA0 734 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 NFU1Q9UMS0 254 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 GOLGA6BA6NDN3 693 aa23.2■■□□□ 1.3
CLN6-224ENST00000638076 ERICH4A6NGS2 130 aa23.2■■□□□ 1.3
CLN6-224ENST00000638076 CHRNB2P17787 502 aa23.2■■□□□ 1.3
CLN6-224ENST00000638076 LIG4P49917 911 aa23.2■■□□□ 1.3
CLN6-224ENST00000638076 PRPF4BQ13523 1007 aaKnown RBP23.2■■□□□ 1.3
CLN6-224ENST00000638076 RHOT2Q8IXI1 618 aa23.2■■□□□ 1.3
CLN6-224ENST00000638076 ELMO3Q96BJ8 720 aa23.2■■□□□ 1.3
CLN6-224ENST00000638076 DCPSQ96C86 337 aaKnown RBP23.2■■□□□ 1.3
CLN6-224ENST00000638076 MYH9P35579 1960 aaKnown RBP23.2■■□□□ 1.3
CLN6-224ENST00000638076 NCAPG2Q86XI2 1143 aa23.2■■□□□ 1.3
CLN6-224ENST00000638076 CASKIN2Q8WXE0 1202 aa23.2■■□□□ 1.3
CLN6-224ENST00000638076 ADARB2Q9NS39 739 aaKnown RBP23.2■■□□□ 1.3
CLN6-224ENST00000638076 DICER1Q9UPY3 1922 aaKnown RBP23.2■■□□□ 1.3
CLN6-224ENST00000638076 DDX3YO15523 660 aaKnown RBP23.19■■□□□ 1.3
CLN6-224ENST00000638076 UBA1P22314 1058 aaKnown RBP23.19■■□□□ 1.3
CLN6-224ENST00000638076 ABCD1P33897 745 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 SULF1Q8IWU6 871 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 SPATC1LQ9H0A9 340 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 DHX33Q9H6R0 707 aaKnown RBP23.19■■□□□ 1.3
CLN6-224ENST00000638076 CTTNBP2NLQ9P2B4 639 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 PTPRFP10586 1907 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 ZNF233A6NK53 670 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 KRIT1O00522 736 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 RTN2O75298 545 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 PAK2Q13177 524 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 PORCNQ9H237 461 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 KCNG1Q9UIX4 513 aa23.19■■□□□ 1.3
CLN6-224ENST00000638076 IRF6O14896 467 aa23.18■■□□□ 1.3
CLN6-224ENST00000638076 MMEP08473 750 aa23.18■■□□□ 1.3
CLN6-224ENST00000638076 GPC5P78333 572 aa23.18■■□□□ 1.3
CLN6-224ENST00000638076 STRN3Q13033 797 aa23.18■■□□□ 1.3
CLN6-224ENST00000638076 TSEN2Q8NCE0 465 aaKnown RBP23.18■■□□□ 1.3
CLN6-224ENST00000638076 ASAP3Q8TDY4 903 aa23.18■■□□□ 1.3
CLN6-224ENST00000638076 TATDN2Q93075 761 aa23.18■■□□□ 1.3
CLN6-224ENST00000638076 ELP3Q9H9T3 547 aa23.18■■□□□ 1.3
CLN6-224ENST00000638076 PSD3Q9NYI0 1048 aa23.18■■□□□ 1.3
CLN6-224ENST00000638076 SOWAHBA6NEL2 793 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 CYP11B1P15538 503 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 GLRA2P23416 452 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 HADHBP55084 474 aaKnown RBP23.17■■□□□ 1.3
CLN6-224ENST00000638076 NNTQ13423 1086 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 TRADDQ15628 312 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 FAM84AQ96KN4 292 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 PAGR1Q9BTK6 254 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 DDX47Q9H0S4 455 aaKnown RBP23.17■■□□□ 1.3
CLN6-224ENST00000638076 IGKV6D-21A0A0A0MT36 114 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 LRRIQ4A6NIV6 560 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 CCDC188H7C350 402 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 SART1O43290 800 aaKnown RBP23.17■■□□□ 1.3
CLN6-224ENST00000638076 EXTL3O43909 919 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 FARP2O94887 1054 aaPredicted RBP23.17■■□□□ 1.3
CLN6-224ENST00000638076 FAM153BP0C7A2 387 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 GZMAP12544 262 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 ITGA4P13612 1032 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 EDNRBP24530 442 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 LMAN1P49257 510 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 FMO1Q01740 532 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 FAM153CQ494X1 144 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 DCAF12L1Q5VU92 463 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 SLC7A3Q8WY07 619 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 PI4K2AQ9BTU6 479 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 NIFKQ9BYG3 293 aaKnown RBP23.17■■□□□ 1.3
CLN6-224ENST00000638076 FAM204AQ9H8W3 233 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 FAM153AQ9UHL3 310 aa23.17■■□□□ 1.3
CLN6-224ENST00000638076 GSTTP1A0A1W2PQM5 241 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 IRX3P78415 501 aaPredicted RBP23.16■■□□□ 1.3
CLN6-224ENST00000638076 ENPEPQ07075 957 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 DHX38Q92620 1227 aaKnown RBP23.16■■□□□ 1.3
CLN6-224ENST00000638076 OTUD5Q96G74 571 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 PCYT2Q99447 389 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 ALG6Q9Y672 507 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 FGGP02679 453 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 ARL2P36404 184 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 NAMPTP43490 491 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 PDE6CP51160 858 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 LMBRD2Q68DH5 695 aaPredicted RBP23.16■■□□□ 1.3
CLN6-224ENST00000638076 DEPTORQ8TB45 409 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 ZNF516Q92618 1163 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 CEP89Q96ST8 783 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 KIAA1586Q9HCI6 787 aa23.16■■□□□ 1.3
CLN6-224ENST00000638076 CHORDC1Q9UHD1 332 aaPredicted RBP23.16■■□□□ 1.3
CLN6-224ENST00000638076 TTC7AQ9ULT0 858 aaPredicted RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms