RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 ZNF446Q9NWS9 450 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 NAGPAQ9UK23 515 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 DNAJC12Q9UKB3 198 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 CAPN6Q9Y6Q1 641 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 FRMPD3Q5JV73 1810 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 SLC16A4O15374 487 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 CCL5P13501 91 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 GARTP22102 1010 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 NAP1L1P55209 391 aaKnown RBP19.9■□□□□ 0.78
CLN3-263ENST00000637871 FAM193AP78312 1265 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 IRX5P78411 483 aaPredicted RBP19.9■□□□□ 0.78
CLN3-263ENST00000637871 LY6KQ17RY6 165 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 MAP9Q49MG5 647 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 BRDTQ58F21 947 aaPredicted RBP19.9■□□□□ 0.78
CLN3-263ENST00000637871 UTP14CQ5TAP6 766 aaKnown RBP19.9■□□□□ 0.78
CLN3-263ENST00000637871 SWSAP1Q6NVH7 229 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 MAEAQ7L5Y9 396 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 KSR1Q8IVT5 923 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 MLXIPQ9HAP2 919 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 NENFQ9UMX5 172 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 TFR2Q9UP52 801 aa19.9■□□□□ 0.78
CLN3-263ENST00000637871 IGSF9BQ9UPX0 1349 aa19.89■□□□□ 0.78
CLN3-263ENST00000637871 CCDC169A6NNP5 214 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 F8VZ95 297 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 H2AFZP0C0S5 128 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 SMPD1P17405 629 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 SP2Q02086 613 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 ARID5AQ03989 594 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 NEDD9Q14511 834 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 H2AFVQ71UI9 128 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 MMGT1Q8N4V1 131 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 ARMC5Q96C12 935 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 OSBPL9Q96SU4 736 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.89■□□□□ 0.77
CLN3-263ENST00000637871 CYP26B1Q9NR63 512 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 HDAC6Q9UBN7 1215 aa19.89■□□□□ 0.77
CLN3-263ENST00000637871 MAFBQ9Y5Q3 323 aaPredicted RBP19.89■□□□□ 0.77
CLN3-263ENST00000637871 ZNF862O60290 1169 aa19.88■□□□□ 0.77
CLN3-263ENST00000637871 PNMA6AP0CW24 399 aaPredicted RBP19.88■□□□□ 0.77
CLN3-263ENST00000637871 DRAP1Q14919 205 aaPredicted RBP19.88■□□□□ 0.77
CLN3-263ENST00000637871 EXOC8Q8IYI6 725 aa19.88■□□□□ 0.77
CLN3-263ENST00000637871 FBXL18Q96ME1 805 aa19.88■□□□□ 0.77
CLN3-263ENST00000637871 HMX1Q9NP08 348 aaPredicted RBP19.88■□□□□ 0.77
CLN3-263ENST00000637871 GRID2IPA4D2P6 1211 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 TXNP10599 105 aaKnown RBP19.87■□□□□ 0.77
CLN3-263ENST00000637871 UBA1P22314 1058 aaKnown RBP19.87■□□□□ 0.77
CLN3-263ENST00000637871 CBWD6Q4V339 395 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 CBWD3Q5JTY5 395 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 CBWD5Q5RIA9 395 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 CCDC181Q5TID7 509 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 PLA2G4FQ68DD2 849 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 CREG2Q8IUH2 290 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 SYCE1Q8N0S2 351 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 SCFD2Q8WU76 684 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 MMS19Q96T76 1030 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 NIFKQ9BYG3 293 aaKnown RBP19.87■□□□□ 0.77
CLN3-263ENST00000637871 RNF208Q9H0X6 261 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 NRBP2Q9NSY0 501 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 TELO2Q9Y4R8 837 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 IGKV6D-21A0A0A0MT36 114 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 RBM47A0AV96 593 aaKnown RBP19.87■□□□□ 0.77
CLN3-263ENST00000637871 DENND3A2RUS2 1198 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 SEPT4O43236 478 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 EVI5O60447 810 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 AKR1A1P14550 325 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 KLRC1P26715 233 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 RFC5P40937 340 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 PRKCEQ02156 737 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 APBA1Q02410 837 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 TNFAIP2Q03169 654 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 GPS2Q13227 327 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 CFAP221Q4G0U5 840 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 EPC2Q52LR7 807 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 GLE1Q53GS7 698 aaKnown RBP19.87■□□□□ 0.77
CLN3-263ENST00000637871 FAM160B1Q5W0V3 765 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 SMYD5Q6GMV2 418 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 CCDC62Q6P9F0 684 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 LMO3Q8TAP4 145 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 CBWD1Q9BRT8 395 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 ZNF302Q9NR11 478 aa19.87■□□□□ 0.77
CLN3-263ENST00000637871 EMSYQ7Z589 1322 aa19.86■□□□□ 0.77
CLN3-263ENST00000637871 TTLL4Q14679 1199 aa19.86■□□□□ 0.77
CLN3-263ENST00000637871 MEI1Q5TIA1 1274 aa19.86■□□□□ 0.77
CLN3-263ENST00000637871 HDXQ7Z353 690 aa19.86■□□□□ 0.77
CLN3-263ENST00000637871 SLC30A5Q8TAD4 765 aa19.86■□□□□ 0.77
CLN3-263ENST00000637871 MFSD14AQ96MC6 490 aa19.86■□□□□ 0.77
CLN3-263ENST00000637871 DEFB118Q96PH6 123 aa19.86■□□□□ 0.77
CLN3-263ENST00000637871 TLR10Q9BXR5 811 aa19.86■□□□□ 0.77
CLN3-263ENST00000637871 SEPT9Q9UHD8 586 aaPredicted RBP19.86■□□□□ 0.77
CLN3-263ENST00000637871 DDX20Q9UHI6 824 aaKnown RBP19.86■□□□□ 0.77
CLN3-263ENST00000637871 COQ4Q9Y3A0 265 aa19.86■□□□□ 0.77
CLN3-263ENST00000637871 TRIM49P0CI25 452 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 TRIM49CP0CI26 452 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 MXI1P50539 228 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 CBX1P83916 185 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 SP4Q02446 784 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 LONRF2Q1L5Z9 754 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 CCDC60Q8IWA6 550 aaPredicted RBP19.85■□□□□ 0.77
CLN3-263ENST00000637871 PBKQ96KB5 322 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 FAM167AQ96KS9 214 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms