RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	N4BP1	O75113	896 aa	Known RBP	12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	CSDE1	O75534	798 aa	Known RBP	12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	ERLIN2	O94905	339 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	HSPA8	P11142	646 aa	Known RBP	12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	CCL5	P13501	91 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	SFPQ	P23246	707 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	EIF4B	P23588	611 aa	Known RBP	12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	GTF2H1	P32780	548 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	FMO5	P49326	533 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	MRPS6	P82932	125 aa	Known RBP	12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	KCNMA1	Q12791	1236 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	NOLC1	Q14978	699 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	PTGIS	Q16647	500 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	CRELD2	Q6UXH1	353 aa	Predicted RBP	12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	GBP6	Q6ZN66	633 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	ZBTB33	Q86T24	672 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	SLC43A3	Q8NBI5	491 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	PARD3B	Q8TEW8	1205 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	CACTIN	Q8WUQ7	758 aa	Known RBP	12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	CPLX3	Q8WVH0	158 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	CELF4	Q9BZC1	486 aa	Known RBP	12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	EDEM3	Q9BZQ6	932 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	MMRN2	Q9H8L6	949 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	CAPN11	Q9UMQ6	739 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823	PCNT	O95613	3336 aa		12.8	□□□□□ -0.36
CLN6-223	ENST00000637823		A0A0U1RQG5	324 aa	Predicted RBP	12.79	□□□□□ -0.36
CLN6-223	ENST00000637823		A0A1B0GUA9	196 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823		A0A1W2PQ45	241 aa	Predicted RBP	12.79	□□□□□ -0.36
CLN6-223	ENST00000637823		A0A1W2PQJ5	194 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823		A0A1W2PQY0	241 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	TSPAN1	O60635	241 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	GYPC	P04921	128 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	TRIM49	P0CI25	452 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	TRIM49C	P0CI26	452 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	MCF2	P10911	925 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	ARF4	P18085	180 aa	Predicted RBP	12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	TRIM21	P19474	475 aa	Known RBP	12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	AXL	P30530	894 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	CASP14	P31944	242 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	ACOT2	P49753	483 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	POU5F1	Q01860	360 aa	Known RBP	12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	CETN1	Q12798	172 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	PTK7	Q13308	1070 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	ARID5B	Q14865	1188 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	PSMD6	Q15008	389 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	SNX17	Q15036	470 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	MTFR1	Q15390	333 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	PKN2	Q16513	984 aa	Known RBP	12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	KYAT1	Q16773	422 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	EXOC3L4	Q17RC7	722 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	C1orf220	Q5T0J3	134 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	EEF1DP3	Q658K8	133 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	FBXO46	Q6PJ61	603 aa	Predicted RBP	12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	CATSPER4	Q7RTX7	472 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	CNGA4	Q8IV77	575 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	CCDC155	Q8N6L0	562 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	TC2N	Q8N9U0	490 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	NEK11	Q8NG66	645 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	PLEKHO2	Q8TD55	490 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	CCDC51	Q96ER9	411 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	PANX2	Q96RD6	677 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	OSMR	Q99650	979 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	RNF208	Q9H0X6	261 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	PLCB1	Q9NQ66	1216 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	GINS2	Q9Y248	185 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	LUC7L2	Q9Y383	392 aa	Known RBP	12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	TRPV2	Q9Y5S1	764 aa		12.79	□□□□□ -0.36
CLN6-223	ENST00000637823	TTC26	A0AVF1	554 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	LRRIQ3	A6PVS8	624 aa	Predicted RBP	12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	DNM1L	O00429	736 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	NRDC	O43847	1150 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	FAM189A1	O60320	539 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	KLK7	P49862	253 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	ADK	P55263	362 aa	Known RBP	12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	DLG4	P78352	724 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	CLDN10	P78369	228 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	PPP3CA	Q08209	521 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	SURF1	Q15526	300 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	ZNF568	Q3ZCX4	644 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	ZNF397	Q8NF99	534 aa	Predicted RBP	12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	CCDC127	Q96BQ5	260 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	CPB2	Q96IY4	423 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	ZNF830	Q96NB3	372 aa	Predicted RBP	12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	DEFB118	Q96PH6	123 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	FNBP1	Q96RU3	617 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	ADPGK	Q9BRR6	497 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	CRACR2A	Q9BSW2	395 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	TTYH3	Q9C0H2	523 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	CDT1	Q9H211	546 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	PDZD7	Q9H5P4	517 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	STARD7	Q9NQZ5	370 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	RBAK	Q9NYW8	714 aa	Predicted RBP	12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	CPSF3	Q9UKF6	684 aa	Known RBP	12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	OGDHL	Q9ULD0	1010 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	CDY2A	Q9Y6F7	541 aa		12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
CLN6-223	ENST00000637823	ARVCF	O00192	962 aa		12.77	□□□□□ -0.37
CLN6-223	ENST00000637823	MFAP3L	O75121	409 aa		12.77	□□□□□ -0.37
CLN6-223	ENST00000637823	CAND2	O75155	1236 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms