RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 TAF2Q6P1X5 1199 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 MPZL3Q6UWV2 235 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 GBP6Q6ZN66 633 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 TMEM139Q8IV31 216 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 ZNF710Q8N1W2 664 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 NME8Q8N427 588 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 EDEM3Q9BZQ6 932 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 PYCARDQ9ULZ3 195 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 FAM189A1O60320 539 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 CABYRO75952 493 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 MYCNP04198 464 aaPredicted RBP20.03■□□□□ 0.8
CLN3-254ENST00000637050 KRT9P35527 623 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 PPP3CAQ08209 521 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 CBWD6Q4V339 395 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 CBWD3Q5JTY5 395 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 CBWD5Q5RIA9 395 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 GDF6Q6KF10 455 aaPredicted RBP20.03■□□□□ 0.8
CLN3-254ENST00000637050 DPY19L2P1Q6NXN4 242 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 USP37Q86T82 979 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 NEK11Q8NG66 645 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 TSEN34Q9BSV6 310 aaKnown RBP20.03■□□□□ 0.8
CLN3-254ENST00000637050 LSM14BQ9BX40 385 aaKnown RBP20.03■□□□□ 0.8
CLN3-254ENST00000637050 GCOM2Q9BZD3 368 aaPredicted RBP20.03■□□□□ 0.8
CLN3-254ENST00000637050 PLCB1Q9NQ66 1216 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 ABHD10Q9NUJ1 306 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 AGPAT5Q9NUQ2 364 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 GRIN2DO15399 1336 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 HTTP42858 3142 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 OGTO15294 1046 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 PMM2O15305 246 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 P4HA2O15460 535 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 NRDCO43847 1150 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 N4BP1O75113 896 aaKnown RBP20.03■□□□□ 0.8
CLN3-254ENST00000637050 NOL4O94818 638 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 FECHP22830 423 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 PON1P27169 355 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 ACOT2P49753 483 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 ACLYP53396 1101 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 ZBED6P86452 979 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 TMEM62Q0P6H9 643 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 NOLC1Q14978 699 aaKnown RBP eCLIP20.03■□□□□ 0.8
CLN3-254ENST00000637050 PSMD6Q15008 389 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 DNAJC5GQ8N7S2 189 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 SH3TC2Q8TF17 1288 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 DNAJC7Q99615 494 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 TCHPQ9BT92 498 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 CDHR5Q9HBB8 845 aa20.03■□□□□ 0.8
CLN3-254ENST00000637050 TRIP12Q14669 1992 aaPredicted RBP20.02■□□□□ 0.8
CLN3-254ENST00000637050 FRMPD3Q5JV73 1810 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 MOXD2PA6NHM9 499 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 LRRIQ3A6PVS8 624 aaPredicted RBP20.02■□□□□ 0.8
CLN3-254ENST00000637050 STX10O60499 249 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 SLC9A1P19634 815 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 MYL7Q01449 175 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 ZBTB41Q5SVQ8 909 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 EEF1DP3Q658K8 133 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 ZBTB33Q86T24 672 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 OR8K1Q8NGG5 319 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 CCDC127Q96BQ5 260 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 BAG1Q99933 345 aaPredicted RBP20.02■□□□□ 0.8
CLN3-254ENST00000637050 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.02■□□□□ 0.8
CLN3-254ENST00000637050 GCNT4Q9P109 453 aa20.02■□□□□ 0.8
CLN3-254ENST00000637050 TSPAN1O60635 241 aa20.01■□□□□ 0.79
CLN3-254ENST00000637050 DARSP14868 501 aaKnown RBP20.01■□□□□ 0.79
CLN3-254ENST00000637050 ARF4P18085 180 aaPredicted RBP20.01■□□□□ 0.79
CLN3-254ENST00000637050 MSNP26038 577 aaKnown RBP20.01■□□□□ 0.79
CLN3-254ENST00000637050 CLDN10P78369 228 aa20.01■□□□□ 0.79
CLN3-254ENST00000637050 PCBP1Q15365 356 aaKnown RBP eCLIP20.01■□□□□ 0.79
CLN3-254ENST00000637050 ZNF568Q3ZCX4 644 aa20.01■□□□□ 0.79
CLN3-254ENST00000637050 FAM47CQ5HY64 1035 aa20.01■□□□□ 0.79
CLN3-254ENST00000637050 KIAA1524Q8TCG1 905 aa20.01■□□□□ 0.79
CLN3-254ENST00000637050 CDT1Q9H211 546 aa20.01■□□□□ 0.79
CLN3-254ENST00000637050 GANQ9H2C0 597 aa20.01■□□□□ 0.79
CLN3-254ENST00000637050 CEP72Q9P209 647 aa20.01■□□□□ 0.79
CLN3-254ENST00000637050 ERLIN2O94905 339 aa20■□□□□ 0.79
CLN3-254ENST00000637050 HARSP12081 509 aaKnown RBP20■□□□□ 0.79
CLN3-254ENST00000637050 EIF4BP23588 611 aaKnown RBP20■□□□□ 0.79
CLN3-254ENST00000637050 GTF2H1P32780 548 aa20■□□□□ 0.79
CLN3-254ENST00000637050 GCLMP48507 274 aa20■□□□□ 0.79
CLN3-254ENST00000637050 TMEM132AQ24JP5 1023 aa20■□□□□ 0.79
CLN3-254ENST00000637050 SERINC5Q86VE9 423 aa20■□□□□ 0.79
CLN3-254ENST00000637050 ZNF397Q8NF99 534 aaPredicted RBP20■□□□□ 0.79
CLN3-254ENST00000637050 OSMRQ99650 979 aa20■□□□□ 0.79
CLN3-254ENST00000637050 NAA15Q9BXJ9 866 aaKnown RBP20■□□□□ 0.79
CLN3-254ENST00000637050 TMEM117Q9H0C3 514 aa20■□□□□ 0.79
CLN3-254ENST00000637050 PDZD7Q9H5P4 517 aa20■□□□□ 0.79
CLN3-254ENST00000637050 SIX2Q9NPC8 291 aa20■□□□□ 0.79
CLN3-254ENST00000637050 RBAKQ9NYW8 714 aaPredicted RBP20■□□□□ 0.79
CLN3-254ENST00000637050 ACTN1P12814 892 aa20■□□□□ 0.79
CLN3-254ENST00000637050 CRYBB1P53674 252 aaPredicted RBP20■□□□□ 0.79
CLN3-254ENST00000637050 APBA1Q02410 837 aa20■□□□□ 0.79
CLN3-254ENST00000637050 PTPN11Q06124 597 aaPredicted RBP20■□□□□ 0.79
CLN3-254ENST00000637050 ITGA7Q13683 1181 aa20■□□□□ 0.79
CLN3-254ENST00000637050 KLHDC7AQ5VTJ3 777 aa20■□□□□ 0.79
CLN3-254ENST00000637050 TRIM65Q6PJ69 517 aa20■□□□□ 0.79
CLN3-254ENST00000637050 LMO3Q8TAP4 145 aa20■□□□□ 0.79
CLN3-254ENST00000637050 BAP1Q92560 729 aa20■□□□□ 0.79
CLN3-254ENST00000637050 CPB2Q96IY4 423 aa20■□□□□ 0.79
CLN3-254ENST00000637050 POP1Q99575 1024 aaKnown RBP20■□□□□ 0.79
CLN3-254ENST00000637050 FBXL5Q9UKA1 691 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms