RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SRRM3A6NNA2 597 aaPredicted RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 KIF3CO14782 793 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 C21orf2O43822 256 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 CD19P15391 556 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 MAN1A1P33908 653 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 PAPOLAP51003 745 aaKnown RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 ATP8B4Q8TF62 1192 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 POMGNT1Q8WZA1 660 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 GRAMD1AQ96CP6 724 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 ROPN1BQ9BZX4 212 aaPredicted RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 ZCWPW1Q9H0M4 648 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 ROPN1Q9HAT0 212 aaPredicted RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 MTMR4Q9NYA4 1195 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 ENTPD5O75356 428 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 CAMTA2O94983 1202 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 SNUPNO95149 360 aaKnown RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 INHBAP08476 426 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 PHBP35232 272 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 ARFIP2P53365 341 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 COG7P83436 770 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 MKRN3Q13064 507 aaKnown RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 ORC2Q13416 577 aaPredicted RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 ASTE1Q2TB18 679 aaPredicted RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLN3-244ENST00000636147 LACTB2Q53H82 288 aaPredicted RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 CRELD2Q6UXH1 353 aaPredicted RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 RBM46Q8TBY0 533 aaKnown RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 MIPOL1Q8TD10 442 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 SLC35C1Q96A29 364 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 VCX3BQ9H321 246 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 VCX3AQ9NNX9 186 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 NAALADL1Q9UQQ1 740 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 CAPN9O14815 690 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 MARK3P27448 753 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 RFC5P40937 340 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 MMP13P45452 471 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 BASP1P80723 227 aaKnown RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 KDSRQ06136 332 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 PDIA2Q13087 525 aaKnown RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 MAP7Q14244 749 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 XKR9Q5GH70 373 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 WLSQ5T9L3 541 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 ZNF572Q7Z3I7 529 aaPredicted RBP11.76□□□□□ -0.53
CLN3-244ENST00000636147 ZNF577Q9BSK1 485 aa11.76□□□□□ -0.53
CLN3-244ENST00000636147 KRT1P04264 644 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 VAMP7P51809 220 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 EPHB1P54762 984 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 GIT2Q14161 759 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 PSMD6Q15008 389 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 P3H1Q32P28 736 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 DUPD1Q68J44 220 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 ARHGAP27Q6ZUM4 889 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 CCDC124Q96CT7 223 aaKnown RBP11.75□□□□□ -0.53
CLN3-244ENST00000636147 SERPINB12Q96P63 405 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 SLC4A9Q96Q91 983 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 NACC1Q96RE7 527 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 PIAS1O75925 651 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 RARAP10276 462 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 ITIH2P19823 946 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 PIK3CAP42336 1068 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 PEX3P56589 373 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 BSPRYQ5W0U4 402 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 HOMEZQ8IX15 550 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 PRELID2Q8N945 189 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 SLCO1B3Q9NPD5 702 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 ATRNO75882 1429 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 C1orf167Q5SNV9 1468 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 TAL1P17542 331 aaPredicted RBP11.75□□□□□ -0.53
CLN3-244ENST00000636147 PGM1P36871 562 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 ZNF543Q08ER8 600 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 BTNL9Q6UXG8 535 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 MIGA2Q7L4E1 593 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 MTDHQ86UE4 582 aaKnown RBP11.75□□□□□ -0.53
CLN3-244ENST00000636147 FITM2Q8N6M3 262 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 MTMR9Q96QG7 549 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 TRAIPQ9BWF2 469 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 MYLK2Q9H1R3 596 aa11.75□□□□□ -0.53
CLN3-244ENST00000636147 MARCOQ9UEW3 520 aaPredicted RBP11.75□□□□□ -0.53
CLN3-244ENST00000636147 CCDC195A0A1B0GUA6 201 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 RTN2O75298 545 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 FOSP01100 380 aaPredicted RBP11.74□□□□□ -0.53
CLN3-244ENST00000636147 HOXA7P31268 230 aaPredicted RBP11.74□□□□□ -0.53
CLN3-244ENST00000636147 MAGEA4P43358 317 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 STAT4Q14765 748 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 GRAMD1BQ3KR37 738 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 C1orf146Q5VVC0 180 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 LVRNQ6Q4G3 990 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 BRINP3Q76B58 766 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 EIF1ADQ8N9N8 165 aaKnown RBP11.74□□□□□ -0.53
CLN3-244ENST00000636147 ATL2Q8NHH9 583 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 LNX1Q8TBB1 728 aaPredicted RBP11.74□□□□□ -0.53
CLN3-244ENST00000636147 CPA5Q8WXQ8 436 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 JDP2Q8WYK2 163 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 CENPTQ96BT3 561 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 RPS6KC1Q96S38 1066 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 MAK16Q9BXY0 300 aaKnown RBP11.74□□□□□ -0.53
CLN3-244ENST00000636147 RBAK-RBAKDNI3L0D1 243 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 SGPL1O95470 568 aa11.74□□□□□ -0.53
CLN3-244ENST00000636147 CUL3Q13618 768 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms