RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 HELQQ8TDG4 1101 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 MRPS27Q92552 414 aaKnown RBP19.95■□□□□ 0.78
CLN3-243ENST00000635973 MRPL9Q9BYD2 267 aaKnown RBP19.95■□□□□ 0.78
CLN3-243ENST00000635973 LRRC27Q9C0I9 530 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 C17orf75Q9HAS0 396 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 KMT5AQ9NQR1 393 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 ENTPD7Q9NQZ7 604 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 LARSQ9P2J5 1176 aaKnown RBP19.95■□□□□ 0.78
CLN3-243ENST00000635973 LZTS1Q9Y250 596 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 PCDHGC5Q9Y5F6 944 aa19.95■□□□□ 0.78
CLN3-243ENST00000635973 A0A1W2PQ27 194 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 A0A1W2PQ64 194 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 A0A1W2PQD8 194 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 PER2O15055 1255 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 GPR37L1O60883 481 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 NPTX2P47972 431 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 EFNA5P52803 228 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 SMTNP53814 917 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 PLCB3Q01970 1234 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 BMS1Q14692 1282 aaKnown RBP19.94■□□□□ 0.78
CLN3-243ENST00000635973 E2F4Q16254 413 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 MAPK6Q16659 721 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 PLPP4Q5VZY2 271 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 CEP57L1Q8IYX8 460 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 MYCT1Q8N699 235 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 CDCA3Q99618 268 aaPredicted RBP19.94■□□□□ 0.78
CLN3-243ENST00000635973 TNMDQ9H2S6 317 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 MAGEF1Q9HAY2 307 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 PARVGQ9HBI0 331 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 AGPAT5Q9NUQ2 364 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 PRMT7Q9NVM4 692 aaPredicted RBP19.94■□□□□ 0.78
CLN3-243ENST00000635973 SPG21Q9NZD8 308 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 KCNG1Q9UIX4 513 aa19.94■□□□□ 0.78
CLN3-243ENST00000635973 MYMKA6NI61 221 aa19.93■□□□□ 0.78
CLN3-243ENST00000635973 ALDH7A1P49419 539 aaKnown RBP19.93■□□□□ 0.78
CLN3-243ENST00000635973 ERVFC1P60507 584 aa19.93■□□□□ 0.78
CLN3-243ENST00000635973 AMPD3Q01432 767 aa19.93■□□□□ 0.78
CLN3-243ENST00000635973 GIT2Q14161 759 aa19.93■□□□□ 0.78
CLN3-243ENST00000635973 CLLU1OSQ5K130 101 aa19.93■□□□□ 0.78
CLN3-243ENST00000635973 LRRC55Q6ZSA7 311 aa19.93■□□□□ 0.78
CLN3-243ENST00000635973 DDX12PQ92771 950 aa19.93■□□□□ 0.78
CLN3-243ENST00000635973 STAMQ92783 540 aa19.93■□□□□ 0.78
CLN3-243ENST00000635973 TCF25Q9BQ70 676 aa19.93■□□□□ 0.78
CLN3-243ENST00000635973 RNF19AQ9NV58 838 aa19.93■□□□□ 0.78
CLN3-243ENST00000635973 BARX2Q9UMQ3 279 aaPredicted RBP19.93■□□□□ 0.78
CLN3-243ENST00000635973 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.92■□□□□ 0.78
CLN3-243ENST00000635973 SLC16A4O15374 487 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 DCXO43602 365 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 TSPAN1O60635 241 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 PRKCBP05771 671 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 CA8P35219 290 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 SYKP43405 635 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 COASYQ13057 564 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 NOTUMQ6P988 496 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 TMC7Q7Z402 723 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 RSPH1Q8WYR4 309 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 MSLNLQ96KJ4 702 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 NGRNQ9NPE2 291 aaKnown RBP19.92■□□□□ 0.78
CLN3-243ENST00000635973 CLEC1BQ9P126 229 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 PHLPP2Q6ZVD8 1323 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 MYH11P35749 1972 aa19.92■□□□□ 0.78
CLN3-243ENST00000635973 C19orf67A6NJJ6 358 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 H0YCG3 227 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 K7ENM7 598 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 IDEP14735 1019 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 AXLP30530 894 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 PBX3P40426 434 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 RAB27AP51159 221 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 NDUFA8P51970 172 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 PRPF4BQ13523 1007 aaKnown RBP19.91■□□□□ 0.78
CLN3-243ENST00000635973 DUSP6Q16828 381 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 GLB1LQ6UWU2 654 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 ZNF598Q86UK7 904 aaKnown RBP19.91■□□□□ 0.78
CLN3-243ENST00000635973 TMEM87AQ8NBN3 555 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 SPIRE2Q8WWL2 714 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 PGBD4Q96DM1 585 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 CPB2Q96IY4 423 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 PRIMPOLQ96LW4 560 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 FAM105AQ9NUU6 356 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 USP25Q9UHP3 1055 aa19.91■□□□□ 0.78
CLN3-243ENST00000635973 CARNS1A5YM72 827 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 K7ERI5 159 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 FSCN2O14926 492 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 B4GALT5O43286 388 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 ZNF131P52739 623 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 RNASELQ05823 741 aaKnown RBP19.9■□□□□ 0.78
CLN3-243ENST00000635973 STRN3Q13033 797 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 LONRF3Q496Y0 759 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 PPP4R3CPQ6ZMV5 832 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 SMRP1Q8NCR6 262 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 CCDC51Q96ER9 411 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 TMEM169Q96HH4 297 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 TRAIPQ9BWF2 469 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 CCDC113Q9H0I3 377 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 GOLPH3LQ9H4A5 285 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 KBTBD4Q9NVX7 518 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 ARHGAP28Q9P2N2 729 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 SERTAD1Q9UHV2 236 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 HPSEQ9Y251 543 aa19.9■□□□□ 0.78
CLN3-243ENST00000635973 INPP5FQ9Y2H2 1132 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms