RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	PPP3CA	Q08209	521 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	SP140	Q13342	867 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	RRP1B	Q14684	758 aa	Known RBP	4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	USP39	Q53GS9	565 aa	Known RBP	4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	SPDYA	Q5MJ70	313 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	C1orf210	Q8IVY1	113 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	PALM2	Q8IXS6	379 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	OR52N2	Q8NGI0	321 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	CASKIN2	Q8WXE0	1202 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	HOXB13	Q92826	284 aa	Predicted RBP	4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	MNT	Q99583	582 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	ADI1	Q9BV57	179 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	NCDN	Q9UBB6	729 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	TRHDE	Q9UKU6	1024 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	MRFAP1	Q9Y605	127 aa		4.11	□□□□□ -1.75
CNOT1-223	ENST00000628857	KLRG2	A4D1S0	409 aa	Predicted RBP	4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	TBKBP1	A7MCY6	615 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	DIRC3	C9JPN6	131 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	GABRD	O14764	452 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	TEX33	O43247	280 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	AKR1B10	O60218	316 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	IL2RB	P14784	551 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	GSPT1	P15170	499 aa	Known RBP	4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	PTH1R	Q03431	593 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	ITK	Q08881	620 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	CNGB1	Q14028	1251 aa	Predicted RBP	4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	VPS72	Q15906	364 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	BMT2	Q1RMZ1	405 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	C1QL3	Q5VWW1	255 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	PGM2L1	Q6PCE3	622 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	CRIP3	Q6Q6R5	217 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857		Q6ZVL8	140 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	ZNF572	Q7Z3I7	529 aa	Predicted RBP	4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	GGN	Q86UU5	652 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	IL17D	Q8TAD2	202 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	EXTL1	Q92935	676 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	FUBP3	Q96I24	572 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	DCLRE1C	Q96SD1	692 aa	Known RBP	4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	GPR87	Q9BY21	358 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	HOMER2	Q9NSB8	354 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	MKS1	Q9NXB0	559 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	MOCS1	Q9NZB8	636 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	CEP72	Q9P209	647 aa		4.1	□□□□□ -1.75
CNOT1-223	ENST00000628857	FZD9	O00144	591 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	TRIM24	O15164	1050 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	GUCY1A2	P33402	732 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	SREBF1	P36956	1147 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	SCNN1G	P51170	649 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	EXOSC10	Q01780	885 aa	Known RBP	4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	OTUD7B	Q6GQQ9	843 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	SPRED1	Q7Z699	444 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	ELOA2	Q8IYF1	753 aa	Predicted RBP	4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	ZFP28	Q8NHY6	868 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	CACTIN	Q8WUQ7	758 aa	Known RBP	4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	UBE2Q2	Q8WVN8	375 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	ATXN2L	Q8WWM7	1075 aa	Known RBP	4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	CPPED1	Q9BRF8	314 aa	Predicted RBP	4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	ZNF747	Q9BV97	191 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	LSM14B	Q9BX40	385 aa	Known RBP	4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	MANSC1	Q9H8J5	431 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	TCF7L1	Q9HCS4	588 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	SAP30BP	Q9UHR5	308 aa	Known RBP	4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	HDAC5	Q9UQL6	1122 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	ATRNL1	Q5VV63	1379 aa		4.09	□□□□□ -1.75
CNOT1-223	ENST00000628857	GRXCR1	A8MXD5	290 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	PRR5-ARHGAP8	B1AHC4	643 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	SGTA	O43765	313 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	FZD7	O75084	574 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	STC2	O76061	302 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	RECQL4	O94761	1208 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	SNRPA1	P09661	255 aa	Known RBP	4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	ALOX15	P16050	662 aa	Predicted RBP	4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	SLC16A1	P53985	500 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	ADK	P55263	362 aa	Known RBP	4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	CLRN1	P58418	232 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	CRHR2	Q13324	411 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	TOB2	Q14106	344 aa	Predicted RBP	4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	PUM1	Q14671	1186 aa	Known RBP eCLIP	4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	NRN1L	Q496H8	165 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	RABL3	Q5HYI8	236 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857		Q6ZRM9	215 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	TRMT2A	Q8IZ69	625 aa	Known RBP	4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	JADE3	Q92613	823 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	GPATCH3	Q96I76	525 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	CHMP4A	Q9BY43	222 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	ASPSCR1	Q9BZE9	553 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	EPC1	Q9H2F5	836 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	LANCL2	Q9NS86	450 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	PCDHGA2	Q9Y5H1	932 aa		4.08	□□□□□ -1.76
CNOT1-223	ENST00000628857	ZMYM3	Q14202	1370 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	TNKS	O95271	1327 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	GAGE12B	A1L429	117 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	GAGE12H	A6NDE8	117 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	ADCY6	O43306	1168 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	PCDHGA12	O60330	932 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	NDUFS2	O75306	463 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	KATNA1	O75449	491 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	RPLP2	P05387	115 aa	Known RBP	4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	OSM	P13725	252 aa		4.07	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms