RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 CALCRLQ16602 461 aa26.42■■□□□ 1.82
CPSF1-214ENST00000622776 CWF19L1Q69YN2 538 aaKnown RBP26.42■■□□□ 1.82
CPSF1-214ENST00000622776 CYP26C1Q6V0L0 522 aa26.42■■□□□ 1.82
CPSF1-214ENST00000622776 CCDC43Q96MW1 224 aaKnown RBP26.42■■□□□ 1.82
CPSF1-214ENST00000622776 NFKBIZQ9BYH8 718 aa26.42■■□□□ 1.82
CPSF1-214ENST00000622776 RHOBTB2Q9BYZ6 727 aa26.42■■□□□ 1.82
CPSF1-214ENST00000622776 NXF3Q9H4D5 531 aaKnown RBP26.42■■□□□ 1.82
CPSF1-214ENST00000622776 TTC12Q9H892 705 aaPredicted RBP26.42■■□□□ 1.82
CPSF1-214ENST00000622776 IGSF9Q9P2J2 1179 aa26.42■■□□□ 1.82
CPSF1-214ENST00000622776 N4BP1O75113 896 aaKnown RBP26.41■■□□□ 1.82
CPSF1-214ENST00000622776 MYBP10242 640 aa26.41■■□□□ 1.82
CPSF1-214ENST00000622776 NBL1P41271 181 aa26.41■■□□□ 1.82
CPSF1-214ENST00000622776 RARRES1P49788 294 aa26.41■■□□□ 1.82
CPSF1-214ENST00000622776 WDR6Q9NNW5 1121 aaKnown RBP26.41■■□□□ 1.82
CPSF1-214ENST00000622776 CHST7Q9NS84 486 aa26.41■■□□□ 1.82
CPSF1-214ENST00000622776 TDRD15B5MCY1 1934 aaKnown RBP26.4■■□□□ 1.82
CPSF1-214ENST00000622776 B4GALT5O43286 388 aa26.4■■□□□ 1.82
CPSF1-214ENST00000622776 RFPL2O75678 378 aa26.4■■□□□ 1.82
CPSF1-214ENST00000622776 NPR3P17342 541 aa26.4■■□□□ 1.82
CPSF1-214ENST00000622776 AKAP5P24588 427 aa26.4■■□□□ 1.82
CPSF1-214ENST00000622776 NECAB1Q8N987 351 aa26.4■■□□□ 1.82
CPSF1-214ENST00000622776 GSTCDQ8NEC7 633 aa26.4■■□□□ 1.82
CPSF1-214ENST00000622776 FBXL21Q9UKT6 434 aa26.4■■□□□ 1.82
CPSF1-214ENST00000622776 DOCK8Q8NF50 2099 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 SPATA31D3P0C874 917 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 AOC1P19801 751 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 GBP2P32456 591 aaPredicted RBP26.39■■□□□ 1.82
CPSF1-214ENST00000622776 TXKP42681 527 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 ANAPC15P60006 121 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 FUT10Q6P4F1 479 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 SPATA31D4Q6ZUB0 917 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 ASCL5Q7RTU5 278 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 CDR2LQ86X02 465 aaPredicted RBP26.39■■□□□ 1.82
CPSF1-214ENST00000622776 PIGOQ8TEQ8 1089 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 HDAC7Q8WUI4 952 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 SMG7Q92540 1137 aaKnown RBP26.39■■□□□ 1.82
CPSF1-214ENST00000622776 STAMQ92783 540 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 B3GALT6Q96L58 329 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 GPR62Q9BZJ7 368 aa26.39■■□□□ 1.82
CPSF1-214ENST00000622776 POLR3FQ9H1D9 316 aaPredicted RBP26.39■■□□□ 1.82
CPSF1-214ENST00000622776 CLUHO75153 1309 aa26.39■■□□□ 1.81
CPSF1-214ENST00000622776 A0A087WWV3 80 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 A0A1B0GUA9 196 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 BTBD18B2RXH4 712 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 WNT7AO00755 349 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 PI15O43692 258 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 NEMFO60524 1076 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 NPTXRO95502 500 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 USP41Q3LFD5 358 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 SLC27A1Q6PCB7 646 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 PALB2Q86YC2 1186 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 GPR65Q8IYL9 337 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 ZNF707Q96C28 371 aaPredicted RBP26.38■■□□□ 1.81
CPSF1-214ENST00000622776 PLEKHA4Q9H4M7 779 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP26.38■■□□□ 1.81
CPSF1-214ENST00000622776 EP300Q09472 2414 aaPredicted RBP26.38■■□□□ 1.81
CPSF1-214ENST00000622776 MYO15AQ9UKN7 3530 aa26.38■■□□□ 1.81
CPSF1-214ENST00000622776 NARSO43776 548 aaKnown RBP26.37■■□□□ 1.81
CPSF1-214ENST00000622776 USO1O60763 962 aaKnown RBP26.37■■□□□ 1.81
CPSF1-214ENST00000622776 C1RP00736 705 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 XRCC6P12956 609 aaKnown RBP eCLIP26.37■■□□□ 1.81
CPSF1-214ENST00000622776 GRIK3Q13003 919 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 ME3Q16798 604 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 SIX5Q8N196 739 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 RSAD2Q8WXG1 361 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 GTF3C6Q969F1 213 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 MTMR9Q96QG7 549 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 MYADMQ96S97 322 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 KLK14Q9P0G3 267 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 EPS15L1Q9UBC2 864 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 PARP2Q9UGN5 583 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 ADAM28Q9UKQ2 775 aa26.37■■□□□ 1.81
CPSF1-214ENST00000622776 PRR23AA6NEV1 266 aa26.36■■□□□ 1.81
CPSF1-214ENST00000622776 TGM5O43548 720 aa26.36■■□□□ 1.81
CPSF1-214ENST00000622776 PAPLNO95428 1278 aa26.36■■□□□ 1.81
CPSF1-214ENST00000622776 LARGE1O95461 756 aa26.36■■□□□ 1.81
CPSF1-214ENST00000622776 DIS3L2Q8IYB7 885 aaKnown RBP26.36■■□□□ 1.81
CPSF1-214ENST00000622776 NSUN7Q8NE18 718 aaKnown RBP26.36■■□□□ 1.81
CPSF1-214ENST00000622776 RIN2Q8WYP3 895 aaPredicted RBP26.36■■□□□ 1.81
CPSF1-214ENST00000622776 RABGGTAQ92696 567 aa26.36■■□□□ 1.81
CPSF1-214ENST00000622776 RTP3Q9BQQ7 232 aa26.36■■□□□ 1.81
CPSF1-214ENST00000622776 NT5C3AQ9H0P0 336 aa26.36■■□□□ 1.81
CPSF1-214ENST00000622776 GPRC5CQ9NQ84 441 aa26.36■■□□□ 1.81
CPSF1-214ENST00000622776 FNIP2Q9P278 1114 aa26.36■■□□□ 1.81
CPSF1-214ENST00000622776 VPS13AQ96RL7 3174 aa26.36■■□□□ 1.81
CPSF1-214ENST00000622776 MTCL1Q9Y4B5 1905 aaKnown RBP26.35■■□□□ 1.81
CPSF1-214ENST00000622776 ZMYM2Q9UBW7 1377 aa26.35■■□□□ 1.81
CPSF1-214ENST00000622776 LRRIQ4A6NIV6 560 aa26.35■■□□□ 1.81
CPSF1-214ENST00000622776 LILRA6Q6PI73 481 aa26.35■■□□□ 1.81
CPSF1-214ENST00000622776 FRMD5Q7Z6J6 570 aa26.35■■□□□ 1.81
CPSF1-214ENST00000622776 GLYCTKQ8IVS8 523 aa26.35■■□□□ 1.81
CPSF1-214ENST00000622776 PIDD1Q9HB75 910 aa26.35■■□□□ 1.81
CPSF1-214ENST00000622776 ZDHHC7Q9NXF8 308 aa26.35■■□□□ 1.81
CPSF1-214ENST00000622776 POTEMA6NI47 508 aa26.34■■□□□ 1.81
CPSF1-214ENST00000622776 SPATA31C1P0DKV0 1188 aa26.34■■□□□ 1.81
CPSF1-214ENST00000622776 FOSBP53539 338 aa26.34■■□□□ 1.81
CPSF1-214ENST00000622776 PPP4R3CPQ6ZMV5 832 aa26.34■■□□□ 1.81
CPSF1-214ENST00000622776 MAEAQ7L5Y9 396 aa26.34■■□□□ 1.81
CPSF1-214ENST00000622776 CCDC105Q8IYK2 499 aa26.34■■□□□ 1.81
CPSF1-214ENST00000622776 SLC44A3Q8N4M1 653 aa26.34■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms