RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 FAM228BP0C875 321 aa16.96■□□□□ 0.3
CPSF1-213ENST00000620219 SOX5P35711 763 aa16.96■□□□□ 0.3
CPSF1-213ENST00000620219 ZCWPW2Q504Y3 356 aa16.96■□□□□ 0.3
CPSF1-213ENST00000620219 ATF7IP2Q5U623 682 aa16.96■□□□□ 0.3
CPSF1-213ENST00000620219 SELENOOQ9BVL4 669 aa16.96■□□□□ 0.3
CPSF1-213ENST00000620219 KIAA1586Q9HCI6 787 aa16.96■□□□□ 0.3
CPSF1-213ENST00000620219 RAB20Q9NX57 234 aa16.96■□□□□ 0.3
CPSF1-213ENST00000620219 RGS2P41220 211 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 GPS2Q13227 327 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 RPUSD2Q8IZ73 545 aaKnown RBP16.95■□□□□ 0.3
CPSF1-213ENST00000620219 CPB2Q96IY4 423 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 CENPHQ9H3R5 247 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 FOXN3O00409 490 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-213ENST00000620219 HSP90B2PQ58FF3 399 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 APBB1IPQ7Z5R6 666 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-213ENST00000620219 GPR20Q99678 358 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 RNPEPQ9H4A4 650 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 REXO2Q9Y3B8 237 aaKnown RBP16.95■□□□□ 0.3
CPSF1-213ENST00000620219 PCDHA2Q9Y5H9 948 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 PPP3CAQ08209 521 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 TWF2Q6IBS0 349 aaKnown RBP16.95■□□□□ 0.3
CPSF1-213ENST00000620219 ARFGAP3Q9NP61 516 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 MRFAP1Q9Y605 127 aa16.95■□□□□ 0.3
CPSF1-213ENST00000620219 EFCAB8A8MWE9 144 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 MAPK7Q13164 816 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 ZNF653Q96CK0 615 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 PACSIN1Q9BY11 444 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 VTA1Q9NP79 307 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 PLCB1Q9NQ66 1216 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 XPNPEP1Q9NQW7 623 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 FAM110CQ1W6H9 321 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 SPOPLQ6IQ16 392 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 ANKRD23Q86SG2 305 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 IFT81Q8WYA0 676 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 CCDC102AQ96A19 550 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-213ENST00000620219 ADRB2P07550 413 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 ABCD1P33897 745 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 GPC3P51654 580 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 NFRKBQ6P4R8 1299 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 DCUN1D2Q6PH85 259 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 SRGAP1Q7Z6B7 1085 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 ADAMTS5Q9UNA0 930 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 CAPN6Q9Y6Q1 641 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 PALMO75781 387 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 LYPLA2O95372 231 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 HOXD13P35453 343 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 GPAT2Q6NUI2 795 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 RAET1EQ8TD07 263 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 DHX38Q92620 1227 aaKnown RBP16.94■□□□□ 0.3
CPSF1-213ENST00000620219 KAT5Q92993 513 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 PIN4Q9Y237 131 aaKnown RBP16.94■□□□□ 0.3
CPSF1-213ENST00000620219 SYNGAP1Q96PV0 1343 aa16.94■□□□□ 0.3
CPSF1-213ENST00000620219 RASSF10A6NK89 507 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 HLA-DRAP01903 254 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 NSFP46459 744 aaKnown RBP16.93■□□□□ 0.3
CPSF1-213ENST00000620219 GTF2BQ00403 316 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 SV2AQ7L0J3 742 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 TLK2Q86UE8 772 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 CCDC94Q9BW85 323 aaPredicted RBP16.93■□□□□ 0.3
CPSF1-213ENST00000620219 STK33Q9BYT3 514 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 ZBTB48P10074 688 aaPredicted RBP16.93■□□□□ 0.3
CPSF1-213ENST00000620219 CAPSQ13938 189 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 MAP4K3Q8IVH8 894 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 SLC30A5Q8TAD4 765 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 ACP6Q9NPH0 428 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 EHD2Q9NZN4 543 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 FRMD3A2A2Y4 597 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 FANCGO15287 622 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 MAGEB2O15479 319 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 EXTL3O43909 919 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 GTF2F1P35269 517 aaKnown RBP eCLIP16.93■□□□□ 0.32e-7■■■■■ 67.6
CPSF1-213ENST00000620219 C2orf54Q08AI8 447 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 SMC1AQ14683 1233 aaKnown RBP16.93■□□□□ 0.3
CPSF1-213ENST00000620219 ZNF699Q32M78 642 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 EDEM3Q9BZQ6 932 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 TRIM31Q9BZY9 425 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 TMEM117Q9H0C3 514 aa16.93■□□□□ 0.3
CPSF1-213ENST00000620219 A0A1W2PQJ5 194 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 ARHGAP25P42331 645 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 OSMRQ99650 979 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 CTIFO43310 598 aaKnown RBP16.92■□□□□ 0.3
CPSF1-213ENST00000620219 PPFIA4O75335 1185 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 SLC18A3Q16572 532 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 DUOXA2Q1HG44 320 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 WDR72Q3MJ13 1102 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 SPIRE2Q8WWL2 714 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 GCOM2Q9BZD3 368 aaPredicted RBP16.92■□□□□ 0.3
CPSF1-213ENST00000620219 AMFRQ9UKV5 643 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 FCGRTP55899 365 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 NCOA4Q13772 614 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 CCL14Q16627 93 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 KCTD19Q17RG1 926 aaPredicted RBP16.92■□□□□ 0.3
CPSF1-213ENST00000620219 SHCBP1Q8NEM2 672 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 PARD6BQ9BYG5 372 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 ADCY3O60266 1144 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 PGK1P00558 417 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 FTLP02792 175 aaPredicted RBP16.92■□□□□ 0.3
CPSF1-213ENST00000620219 CLCN6P51797 869 aa16.92■□□□□ 0.3
CPSF1-213ENST00000620219 ZNF131P52739 623 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms